PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P15100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 667aa    MW: 75253.8 Da    PI: 6.0873
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P15100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3665.5e-21133238197
                             EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE........EEETTEEEE-TTHHHHHHHHT--T CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy......rkksgryvltkGWkeFvkangLke 76 
                             f+k+lt sd++++g +++ +++a+e+     +++++ +++l+ +d+++ +W++k+iy      +++++r++lt+GW+ Fv +++L +
  GSMUA_Achr10P15100_001 133 FCKILTASDTSTHGGFSVLRRHATEClppldMSQQTPTQELVAKDLHNFEWRFKHIYrgkyriSRQPRRHLLTTGWSTFVTSKRLAA 219
                             99*****************************555556679*****************999999999999****************** PP

                             T-EEEEEE-SSSEE..EEEEE CS
                      B3  77 gDfvvFkldgrsefelvvkvf 97 
                             gD +vF   + +++el+v+v+
  GSMUA_Achr10P15100_001 220 GDAFVFL--RGENGELRVGVR 238
                             *******..449999999986 PP
2Auxin_resp97.91.5e-32265344183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+ha++t++ F+v+Y+Pr+  s+F+++v+k++kal+  +++G Rfkm+fe+ed++e+r+sGtv+g++d+++ +W++SkWrsLk
  GSMUA_Achr10P15100_001 265 ASHAVTTNTLFTVYYKPRT--SQFIISVNKYLKALQEGYTLGARFKMRFEGEDVPEKRFSGTVIGIEDCSS-QWTGSKWRSLK 344
                             689***************6..9**********************************************887.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-39122268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-36125254IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-16132239No hitNo description
PROSITE profilePS5086310.842133241IPR003340B3 DNA binding domain
PfamPF023627.5E-19133238IPR003340B3 DNA binding domain
SMARTSM010194.1E-15133241IPR003340B3 DNA binding domain
PfamPF065072.6E-30265344IPR010525Auxin response factor
PfamPF023095.5E-11525643IPR033389AUX/IAA domain
SuperFamilySSF542777.85E-13550629No hitNo description
PROSITE profilePS5174527.766553645IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MAYEAAARVG ARAEGVQSGK GLGGGDVLYE ELWRACAGPL VEVPRADDRV FYFPQGHIEQ  60
LEASTNQELN QQIPLFNLPY KILCRVVDVR LKADPETDEV FAQIVLLPEA DQREPTSSEP  120
RLPEQPRPTV YSFCKILTAS DTSTHGGFSV LRRHATECLP PLDMSQQTPT QELVAKDLHN  180
FEWRFKHIYR GKYRISRQPR RHLLTTGWST FVTSKRLAAG DAFVFLRGEN GELRVGVRCL  240
ARQRSAIPAS VISSQSMHLG VLAAASHAVT TNTLFTVYYK PRTSQFIISV NKYLKALQEG  300
YTLGARFKMR FEGEDVPEKR FSGTVIGIED CSSQWTGSKW RSLKVQWDEA CNIDRPERVS  360
PWEIEPFNAL TPASSLAQPV VVKSKRSRQP SDTADLSILE PTAAFWYSGT NEPHEMLSFT  420
GTDAENLETH DAWPCIQKER KGNDIVIASS SHDQVFCDGW FREVQTPRRS SPSLLNSLNL  480
FQETNEETNI TYRLFGIDLF SHSNCTADTD MVTGLPFSNS DQKLGFSKSS KEQKQSPQDN  540
SKEMYGRHSC SGRSRTKVHM HGLAVGRAVD LTVLEGYDEL LAELEQMFKI EGELQHRNKW  600
EVVFTDDEGD MMLAGDDPWL EFCNMARKIF IYPTEEVKKM KPRGRLTPVA DGEEHVLCSE  660
KDSTTEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-169133713359Auxin response factor 1
4ldw_A1e-169133713359Auxin response factor 1
4ldw_B1e-169133713359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421471.10.0PREDICTED: auxin response factor 11-like isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLM0RID60.0M0RID6_MUSAM; Auxin response factor
STRINGGSMUA_Achr10P15100_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.30.0auxin response factor 11