PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P14570_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 312aa    MW: 34558.9 Da    PI: 7.9774
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P14570_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18139188255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +++GVr+++ +g+++AeIrdp     r  r++lg+++taeeAak ++ a+ +l+g
  GSMUA_Achr10P14570_001 139 RFRGVRRRP-WGKYAAEIRDPL----RrVRVWLGTYDTAEEAAKVYDSAAIQLRG 188
                             69*******.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-20139196IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.7E-29139196IPR001471AP2/ERF domain
PROSITE profilePS5103223.275139196IPR001471AP2/ERF domain
SMARTSM003801.1E-33139202IPR001471AP2/ERF domain
PfamPF008475.7E-12139188IPR001471AP2/ERF domain
PRINTSPR003678.0E-10140151IPR001471AP2/ERF domain
CDDcd000182.27E-23147195No hitNo description
PRINTSPR003678.0E-10162178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MMRGLCVFFD LITGKKRKLM RGNLNRTENS YLGAMDVTLL MVPIKRTEHI DVTQKTLPWG  60
QYHRHSDVAR PSTIRIFCDD YDATDSSGDE GCRRRVRRYV QEVRFQARFE AVGKSKPARK  120
RKAAGPAVAA SSSGEAERRF RGVRRRPWGK YAAEIRDPLR RVRVWLGTYD TAEEAAKVYD  180
SAAIQLRGPD ATTNFSRPPA AAASTAPPKK CLSSSNLTSI SGGHDSSEES LPGQLSGLLP  240
FDEAMLHDEF HDLGATKPSL FDDDARVGPL AGDLNDIFLG TDLDFGSSTW QGGDDYFQDI  300
VDLFPIEPLA AV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-181391951471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275161e-54KJ727516.1 Zea mays clone pUT5375 AP2-EREBP transcription factor (EREB96) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421241.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
RefseqXP_009421242.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
RefseqXP_018674543.10.0PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLM0RI830.0M0RI83_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P14570_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-24cytokinin response factor 2