PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P14340_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 265aa    MW: 29252.3 Da    PI: 9.773
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P14340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.62.3e-3462159297
                     TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 
                             +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+ +++ +++++ +a s+s  ++ + +
  GSMUA_Achr10P14340_001  62 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKVAIDQLAVLPAWTPTATvTATSKSTFHHPPPA 148
                             79**************************************************************55555334222222222221111 PP

                     TCP  88 g.kaaksaaks 97 
                             + + a++++++
  GSMUA_Achr10P14340_001 149 NrSPAAEQPSG 159
                             11111111122 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.8E-3062141IPR005333Transcription factor, TCP
PROSITE profilePS5136933.01764122IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGESQSHRGG LGFHQLAQQQ QQQEQEQEQP QQQAQVHSRF RRLRGVGGEI VEVQGGHILR  60
STGRKDRHSK VCTAKGPRDR RVRLSAHTAI QFYDVQDRLG YDRPSKAVDW LIKNAKVAID  120
QLAVLPAWTP TATVTATSKS TFHHPPPANR SPAAEQPSGH VGGAGSNSFL PLSLDSDAIA  180
NTIKSFLPMA AGATSTSPSS SSPIGFQNYR PDFLCLTSSQ NQDLRLSLQS FQDPIFHHSK  240
SSHHHHYQHQ HQKPPNDSME RGGDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2069122154Putative transcription factor PCF6
5zkt_B1e-2069122154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421258.11e-139PREDICTED: transcription factor PCF5-like
SwissprotA2WM141e-70PCF5_ORYSI; Transcription factor PCF5
SwissprotQ8LT077e-72PCF5_ORYSJ; Transcription factor PCF5
TrEMBLM0RI600.0M0RI60_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P14340_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53230.12e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3