PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P14030_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 298aa MW: 33073.5 Da PI: 6.1039

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P14030_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.6e-17	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l+ v++ G g+W+t +++ g++R++k+c++rw +yl GSMUA_Achr10P14030_001 39 RGPWTPEEDEVLASFVRREGEGRWRTLPKRAGLRRCGKSCRLRWMNYL 86 89********************************************97 PP
2	Myb_DNA-binding	47	6e-15	97	137	6	48
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l GSMUA_Achr10P14030_001 97 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 137 89*************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-22	30	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.086	34	86	IPR017930	Myb domain
SuperFamily	SSF46689	2.93E-29	36	133	IPR009057	Homeodomain-like
SMART	SM00717	3.2E-12	38	88	IPR001005	SANT/Myb domain
Pfam	PF00249	3.9E-15	39	86	IPR001005	SANT/Myb domain
CDD	cd00167	7.50E-10	41	86	No hit	No description
PROSITE profile	PS51294	24.655	87	141	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.7E-24	89	142	IPR009057	Homeodomain-like
SMART	SM00717	9.9E-14	91	139	IPR001005	SANT/Myb domain
CDD	cd00167	2.01E-11	97	137	No hit	No description
Pfam	PF00249	9.9E-14	97	137	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MRNPSQSSAP GSSSTAAVEV EGRRRGGPTP CCSKVGLKRG PWTPEEDEVL ASFVRREGEG 60 RWRTLPKRAG LRRCGKSCRL RWMNYLRPSI KHGPIAPDEE DLILRLHRLL GNRWSLIAGR 120 IPGRTDNEIK NYWNTHLSKK LISQGIDPRT HKPLASSTPD AIQQPLAPPS YTNPNPSTRS 180 FSDRQNLQHD DDDDDEGWRN NELLDDDIFS SFLDSLINED AFQLQHNVSN NDDNIILDNT 240 INNNNSGNGN NQEMQPAGAS TAPSGPVCGF GTFWEAGFVG QIGLEEGVHE QFADHAGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-24	37	141	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009421291.1	0.0	PREDICTED: transcription repressor MYB5-like
Swissprot	Q38850	5e-83	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	M0RI29	0.0	M0RI29_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P14030_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	1e-78	myb domain protein 5

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]