PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P12860_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 302aa MW: 34543.8 Da PI: 9.8676

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P12860_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.5	2.5e-53	7	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeel+v+yL ++v+++++++ v++evdiyk++PwdLp+k++ +++ewyfFs+rd+ky++g+r+nra++sgyWkatg GSMUA_Achr10P12860_001 7 LPPGFRFHPTDEELIVHYLINRVSSSPCPV-PVVAEVDIYKHDPWDLPAKATYGDREWYFFSPRDRKYPNGRRPNRAAASGYWKATG 92 79**************************.89***********988899***************************** PP NAM 88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +dk+++++ k++ +g+kk Lvfykgr p+g kt+W+mheyrl GSMUA_Achr10P12860_001 93 TDKAIHTSsgKNHSIGVKKALVFYKGRPPRGLKTNWIMHEYRL 135 **99767777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-63	5	168	IPR003441	NAC domain
PROSITE profile	PS51005	61.133	7	167	IPR003441	NAC domain
Pfam	PF02365	1.4E-27	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MSNPASLPPG FRFHPTDEEL IVHYLINRVS SSPCPVPVVA EVDIYKHDPW DLPAKATYGD 60 REWYFFSPRD RKYPNGRRPN RAAASGYWKA TGTDKAIHTS SGKNHSIGVK KALVFYKGRP 120 PRGLKTNWIM HEYRLAEAAR SSCSRPLKSS HSSMRLDDWV LCRIYKKNSH LQPVPPLENF 180 ERQRSLRLQE SSSVSDTLED DSTLSRLFDT LTRPENTSFM AQPRLTRFST GSSSRINGDT 240 NTAHRQQTQT EPFVPATENS MKRLMECYLD SGRHFSGQFD GSLLEQHFFN QQLLLNSHLG 300 LR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	3e-71	6	172	19	173	NAC domain-containing protein 19
3swm_B	3e-71	6	172	19	173	NAC domain-containing protein 19
3swm_C	3e-71	6	172	19	173	NAC domain-containing protein 19
3swm_D	3e-71	6	172	19	173	NAC domain-containing protein 19
3swp_A	3e-71	6	172	19	173	NAC domain-containing protein 19
3swp_B	3e-71	6	172	19	173	NAC domain-containing protein 19
3swp_C	3e-71	6	172	19	173	NAC domain-containing protein 19
3swp_D	3e-71	6	172	19	173	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420951.1	0.0	PREDICTED: NAC transcription factor 29
Swissprot	Q84TD6	5e-87	NAC47_ARATH; NAC transcription factor 47
TrEMBL	M0RHR2	0.0	M0RHR2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P12860_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1237	36	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-77	NAC domain containing protein 25

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]