PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P12830_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 304aa    MW: 33565.4 Da    PI: 6.5063
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P12830_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-1778123147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
  GSMUA_Achr10P12830_001  78 RGHWRPAEDAKLKELVSQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 123
                             899*****************************.***********996 PP
2Myb_DNA-binding58.12e-18130173146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             r ++++eE+e+l+ a++++G++ W++Iar ++ gRt++ +k++w+ 
  GSMUA_Achr10P12830_001 130 RSAFSEEEEERLLAAHRLYGNK-WALIARLFP-GRTDNAVKNHWHV 173
                             789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.29573124IPR017930Myb domain
SuperFamilySSF466892.55E-2877171IPR009057Homeodomain-like
SMARTSM007174.9E-1477126IPR001005SANT/Myb domain
PfamPF002495.1E-1678123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2679131IPR009057Homeodomain-like
CDDcd001671.31E-1381122No hitNo description
PROSITE profilePS5129427.236125179IPR017930Myb domain
SMARTSM007171.2E-15129177IPR001005SANT/Myb domain
PfamPF002491.6E-15130172IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-21132178IPR009057Homeodomain-like
CDDcd001674.90E-8141172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MASDEPKSIG DMGLFAPPPP PSPGAMECLG GERAWGFQGL AGGKDYHEGE QNSSLGEEAE  60
GGDDTNHESG QQHKLCVRGH WRPAEDAKLK ELVSQYGPQN WNLIAEKLEG RSGKSCRLRW  120
FNQLDPRINR SAFSEEEEER LLAAHRLYGN KWALIARLFP GRTDNAVKNH WHVIMARKHR  180
EQDESASTCT DLSLTSFTSR AFPNLLYRSC PTYQPTHPCD ISIGIKNGCH DKFGDAGRGF  240
FSGVAPMELV PGADQAAYSC STTEASASGT VVYHRRNAWP QAEPDHGREK IRIPFIDFLG  300
VGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-34761785107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420952.10.0PREDICTED: uncharacterized protein LOC104000597 isoform X1
RefseqXP_018674663.10.0PREDICTED: uncharacterized protein LOC104000597 isoform X1
TrEMBLM0RHQ90.0M0RHQ9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P12830_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-63myb domain protein 105