PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P12120_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Trihelix

Protein Properties

Length: 340aa MW: 36725.5 Da PI: 4.8075

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P12120_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.4	1.2e-25	31	134	1	86
trihelix 1 rWtkqevlaLiearremeerlr.rgk....................lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 rWt+qe+l+Li+++r +e+r r rg+ +p+W++vs+++r++g+ r+p+qC+++w+nl++++kkike GSMUA_Achr10P12120_001 31 RWTRQEILVLIQGKRVVESRGRgRGAgrggggsgemgagalvaaasPVEPKWASVSSYCRRHGVDRGPVQCRKRWSNLAGDFKKIKE 117 8*****************9953335677788888889999988799*********************************** PP trihelix 67 gekkrtsessstcpyfdqle 86 +e k+ ++s + + ++l+ GSMUA_Achr10P12120_001 118 WEAKG---KESFWTMRNDLR 134 *97...445688877775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.4E-10	31	129	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-4	31	108	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MANAVDTAGS NGDDGAGGGG GGGARPPRLP RWTRQEILVL IQGKRVVESR GRGRGAGRGG 60 GGSGEMGAGA LVAAASPVEP KWASVSSYCR RHGVDRGPVQ CRKRWSNLAG DFKKIKEWEA 120 KGKESFWTMR NDLRRERRLP GFFDREVYDI LDGVAVAEVE AEPAAEEEEE GKKGLGRTAA 180 AGGEEEEAVF DSGRTAAEDG LFSDFEEEKE AEDEDEDTAP PPQPVAAVPI SEKKCESSQH 240 WRSDEATAKD KPQAENPGKS SPSQGGQKRR RTSPDEAEDS DLQSRLIEVL ERNSRMLTAQ 300 LEAQNMNCQL DRDQRKDQAN GLLAVLGKLA DALGRIADKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	58	RGRGRGAGRG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009421028.1	0.0	PREDICTED: trihelix transcription factor ASR3-like
Swissprot	Q8VZ20	2e-87	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	M0RHI8	0.0	M0RHI8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P12120_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3915	26	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	5e-49	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]