PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P12070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 824aa    MW: 90987.3 Da    PI: 6.7712
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P12070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82e-23163264199
                             EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                             f+k+lt sd++++g +++ +++a+e+     ++ ++ s++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F
  GSMUA_Achr10P12070_001 163 FCKTLTASDTSTHGGFSVLRRHADEClppldMSRQPPSQELVAKDLHGVEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 249
                             99*****************************444556679*********************************************** PP

                             EE-SSSEE..EEEEE-S CS
                      B3  83 kldgrsefelvvkvfrk 99 
                                + +++el+v+v+r+
  GSMUA_Achr10P12070_001 250 L--RGENGELRVGVRRA 264
                             *..449999*****996 PP
2Auxin_resp1187.8e-39289371183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+ha++t+++F+v+Y+Pr+s+seF+v+++++++++k++ svGmRfkm+fe+e+++e+r++Gt+vg+ d+d++rWp+SkW++Lk
  GSMUA_Achr10P12070_001 289 AWHAVNTGTMFTVYYKPRTSPSEFIVPFDQYVESIKRNHSVGMRFKMRFEGEEAPEQRFTGTIVGIGDSDSSRWPGSKWKCLK 371
                             89*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-41156278IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-41157292IPR015300DNA-binding pseudobarrel domain
CDDcd100178.92E-22162263No hitNo description
SMARTSM010193.0E-23163265IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928163265IPR003340B3 DNA binding domain
PfamPF023623.5E-21163264IPR003340B3 DNA binding domain
PfamPF065072.6E-36289371IPR010525Auxin response factor
PROSITE profilePS5174523.291689771IPR000270PB1 domain
SuperFamilySSF542772.06E-11692766No hitNo description
PfamPF023095.6E-7735774IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MASSEVSVKG SSVGRGQSLS SGCSEPHEGA PVRGGDAEGS MEYSGGAVSG KDSEDALYTE  60
LWLACAGPLV TIPRFGERVF YFPQGHIEQV EASTNQVADQ QMPVYNIPWK IPCRVMDVRL  120
KAEPDTDEVF AQVTLIPDSK QDENTVEKEM LPPPPPRPHV YSFCKTLTAS DTSTHGGFSV  180
LRRHADECLP PLDMSRQPPS QELVAKDLHG VEWRFRHIFR GQPRRHLLQS GWSVFVSSKR  240
LVAGDAFIFL RGENGELRVG VRRAMRQQNN VPSSVISSHS MHLGVLATAW HAVNTGTMFT  300
VYYKPRTSPS EFIVPFDQYV ESIKRNHSVG MRFKMRFEGE EAPEQRFTGT IVGIGDSDSS  360
RWPGSKWKCL KVRWDETSSI PRPDRVSPWK IEPALTPPPL NPLLMPRPKK PRTAAFSYSP  420
DSSILRKEAA PKVIADPSQS HGSPRVLQGQ EIMTLRSAFA DSNESGAAKK SIMWSTNAEE  480
KNDVSSQRRF GSDSWMHTKR HEQTCAEILS GFRAPDSSGF RSPLLEHNSG DKSLSKPHLQ  540
DQESRHNYSP GSWSLMPPHS DFSMESRKDN QPQPKVIKPQ PLVPSQIDVA KPKASSGYKL  600
FGFHINSSPM ISESAVPQSN SADILISHSC QTSTLPQPHG LEADKHSESS IVAKLVGTTP  660
TNGDAEKLIQ ACPQAPKEGQ SKLQGGPIRS CTKVHKQGIA LGRSVDLTKF NGYDELIAEL  720
DQMFEFEGAL VAPNKNWLVV YTDNEGDMML VGDDPWNEFC NMVHKIYIYT REEVHRMNPG  780
TLNSRVEESP AASDEKIAGK ETNGPVPTPD PDNSEGCPGV DAAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1714539312354Auxin response factor 1
4ldw_A1e-1714539312354Auxin response factor 1
4ldw_B1e-1714539312354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421032.10.0PREDICTED: auxin response factor 24-like isoform X2
SwissprotQ2QQX60.0ARFX_ORYSJ; Auxin response factor 24
TrEMBLM0RHI30.0M0RHI3_MUSAM; Auxin response factor
STRINGGSMUA_Achr10P12070_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP117836111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.40.0auxin response factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li G, et al.
    Rice actin-binding protein RMD is a key link in the auxin-actin regulatory loop that controls cell growth.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(28): p. 10377-82
    [PMID:24982173]