PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P11580_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 463aa    MW: 49935.2 Da    PI: 7.6542
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P11580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1031.7e-32211267259
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             dDgynWrKYGqK+vkgse+prsYY+C++++Cpvkkkve+s  d++++ei+Y+g+Hnh+
  GSMUA_Achr10P11580_001 211 DDGYNWRKYGQKMVKGSEYPRSYYKCSHSNCPVKKKVEHSL-DGQITEIIYKGQHNHT 267
                             8****************************************.***************7 PP
2WRKY105.52.8e-33366424159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k++er+a+dpk+v++tYeg+Hnh+
  GSMUA_Achr10P11580_001 366 LDDGYRWRKYGQKVVKGNPNPRSYYKCTYHGCNVRKHIERAATDPKAVVTTYEGKHNHD 424
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-29206269IPR003657WRKY domain
SuperFamilySSF1182906.93E-26208269IPR003657WRKY domain
SMARTSM007746.4E-36210268IPR003657WRKY domain
PfamPF031063.9E-25211266IPR003657WRKY domain
PROSITE profilePS5081122.986211269IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-36351426IPR003657WRKY domain
SuperFamilySSF1182906.02E-29358426IPR003657WRKY domain
PROSITE profilePS5081137.929361426IPR003657WRKY domain
SMARTSM007741.3E-38366425IPR003657WRKY domain
PfamPF031062.1E-25367424IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MAESGAGGGA GGGEGKSAAA GAGKPPRPTI TLPPRSALES LFHGGGGIPE VSPGPLTLVS  60
SFFADDPESE CRSFTQLLVG AMNSPAGLVR LGQNRPASLA VSQTQAFAIP PGLSPASLLD  120
SPGFFSSGLG TFGVSHQEAL AQVTAQPSHS QYCMLSQAEY PSTFVATSSS QHPIQEISTL  180
KPNSTAYESA GVPHSDQISQ PMAITVDKPA DDGYNWRKYG QKMVKGSEYP RSYYKCSHSN  240
CPVKKKVEHS LDGQITEIIY KGQHNHTRPV LNKRSKEDGI FHSGSNEITE SVNNPTTSES  300
ASHESDYSAP QQLFGSCDRE EASEIQKDGR DGHDADAKRM NVSVSSQTTS TEPKVVVQTT  360
SEVDLLDDGY RWRKYGQKVV KGNPNPRSYY KCTYHGCNVR KHIERAATDP KAVVTTYEGK  420
HNHDVPFARN SNGMMAVIKY SNNNNNNNNN NRIVSFNYLK SIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-40211426877Probable WRKY transcription factor 4
2lex_A5e-40211426877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009421082.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-135WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLM0RHD40.0M0RHD4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P11580_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-136WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]