PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P11020_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 242aa MW: 26380 Da PI: 8.1918 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.9 | 4.9e-33 | 84 | 138 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 v+Y+eClkNhAa++Gg+a+DGCgEfmps geegt +alkC+AC+CHRnFHR+eve GSMUA_Achr10P11020_001 84 VKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGTLEALKCSACNCHRNFHRKEVEG 138 89*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.6E-30 | 84 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-25 | 84 | 147 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 4.7E-31 | 85 | 136 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.418 | 86 | 135 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-31 | 163 | 236 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.81E-19 | 166 | 235 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.7E-28 | 174 | 230 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDLSGHDGDI PIPIPITSTY VVGHGPPHGH GMTHDTSPLH HRSSGSSPPP AAAAAAPPPP 60 LSAATTEDHH HSTNPYSTKK GLVVKYRECL KNHAAAIGGN ATDGCGEFMP SGEEGTLEAL 120 KCSACNCHRN FHRKEVEGEP PPHMIMPLGA MQTSESDEME GAGGGMMARP PLVKKRFRTK 180 FTAEQKEKML HFAEKAGWRL QKQEESAVQQ FCQEIGVKRR VLKVWMHNNK HNLAKKTPLQ 240 LE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-25 | 175 | 232 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009421143.1 | 1e-154 | PREDICTED: zinc-finger homeodomain protein 4-like | ||||
Swissprot | O64722 | 2e-70 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | M0RH78 | 1e-180 | M0RH78_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P11020_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 2e-69 | homeobox protein 31 |
Publications ? help Back to Top | |||
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