PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P10790_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 206aa MW: 22817.1 Da PI: 6.1095 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 126.6 | 2e-39 | 7 | 125 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGf+F P+deelvv++L++k+++ ++ ++i+++d+++++PwdL+ k++++++++wyfF++r+ +nrat++gyW+a GSMUA_Achr10P10790_001 7 LPPGFQFFPSDEELVVHFLRPKAAHLPCYP-DIIPTIDLHHCDPWDLDgKALQGGNRHWYFFTRRS--------QNRATANGYWHAV 84 79*************************888.89**************9778889999******985........589********** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +d++v+s +++ vg+kktL +y g+ap+g kt+W+mhey+l GSMUA_Achr10P10790_001 85 STDETVTS-NHTPVGIKKTLRYYLGEAPEGIKTNWLMHEYHL 125 ********.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-49 | 5 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.407 | 7 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.4E-25 | 8 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MGEGSNLPPG FQFFPSDEEL VVHFLRPKAA HLPCYPDIIP TIDLHHCDPW DLDGKALQGG 60 NRHWYFFTRR SQNRATANGY WHAVSTDETV TSNHTPVGIK KTLRYYLGEA PEGIKTNWLM 120 HEYHLPDAGL GSSSSSNGGS TSSSNSSRRK RGGQPTRTES NKWVVCRVHE SAGGSQSSFH 180 DDGSELSCLD EVFLSLDDLD DISLPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-37 | 6 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-37 | 6 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-37 | 6 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-37 | 6 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-37 | 6 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-37 | 6 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-37 | 6 | 177 | 19 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-37 | 6 | 177 | 19 | 174 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009421172.1 | 1e-153 | PREDICTED: NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 4e-66 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | M0RH55 | 1e-152 | M0RH55_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P10790_001 | 1e-153 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3667 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 8e-59 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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