PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P09490_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Trihelix

Protein Properties

Length: 429aa MW: 49564.2 Da PI: 7.2488

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P09490_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.8	9.4e-26	138	233	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77 +Wt+ +v++Li+a+++++e++ +++ +kk++W+++sk+m+erg+ +sp+qC++k+++lnkryk+++++ +++ ++++++ GSMUA_Achr10P09490_001 138 KWTDAMVRLLITAVSYIGEDVASECggrrkyailQKKGKWKAISKVMAERGCYVSPQQCEDKFNDLNKRYKRLTDILGRGtSCKVVE 224 7*******************988888999999********************************************6699999 PP trihelix 78 tcpyfdqle 86 + +++++++ GSMUA_Achr10P09490_001 225 NPALLEHMN 233 999999995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-22	136	258	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MWGEKRGRWY VWYVVHVNRM GLCFFDQYHI IRHQMEGNYP AGSMMPGASY GVLGLQGNMH 60 MRQGSMIQAP MLDAFPMSDN QLQESDYQAG VSVMGYNKGK VGKTSMSDDD EPSFTKDGTD 120 GQIDAGKGEK GSSWQRMKWT DAMVRLLITA VSYIGEDVAS ECGGRRKYAI LQKKGKWKAI 180 SKVMAERGCY VSPQQCEDKF NDLNKRYKRL TDILGRGTSC KVVENPALLE HMNISEKLKE 240 DARKILSSKH LFYEEMCSYH NCNRLNLPED PALQRSLQLA LRIRDEHDTK RSSLEDVDED 300 DQSADSDDEE ELAFSNCSGS RDCNRSLHPQ GLTVDMNQVF SEGSKSAMIP QQWVSSYPIQ 360 LEEKRLHIQA QMLELERQRY KWQRFSKKKD RELNIMRMEN ERMELENKRL SLELQKKELE 420 LNLTLKKTQ

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MWGEKRGRWY VWYVVHVNRM GLCFFDQYHI IRHQMEGNYP AGSMMPGASY GVLGLQGNMH  60
MRQGSMIQAP MLDAFPMSDN QLQESDYQAG VSVMGYNKGK VGKTSMSDDD EPSFTKDGTD  120
GQIDAGKGEK GSSWQRMKWT DAMVRLLITA VSYIGEDVAS ECGGRRKYAI LQKKGKWKAI  180
SKVMAERGCY VSPQQCEDKF NDLNKRYKRL TDILGRGTSC KVVENPALLE HMNISEKLKE  240
DARKILSSKH LFYEEMCSYH NCNRLNLPED PALQRSLQLA LRIRDEHDTK RSSLEDVDED  300
DQSADSDDEE ELAFSNCSGS RDCNRSLHPQ GLTVDMNQVF SEGSKSAMIP QQWVSSYPIQ  360
LEEKRLHIQA QMLELERQRY KWQRFSKKKD RELNIMRMEN ERMELENKRL SLELQKKELE  420
LNLTLKKTQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420589.1	0.0	PREDICTED: uncharacterized protein LOC104000302
TrEMBL	M0RGS5	0.0	M0RGS5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P09490_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-113	sequence-specific DNA binding transcription factors