PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P09190_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Dof | ||||||||
Protein Properties | Length: 348aa MW: 37530.1 Da PI: 8.2709 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125 | 2.4e-39 | 50 | 108 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++al+cprCds+ntkfCy+nnyslsqPr+fCkaC+ryWt+GGalrnvPvGgg+rknk++ GSMUA_Achr10P09190_001 50 QAALRCPRCDSSNTKFCYFNNYSLSQPRHFCKACKRYWTHGGALRNVPVGGGCRKNKRA 108 67899****************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 47 | 107 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-33 | 52 | 107 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.571 | 53 | 107 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 55 | 91 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MDDRLLVTEK YNSGSNGTNT NKNNTIHAGS ATLDVSGVMN KPLSASEHAQ AALRCPRCDS 60 SNTKFCYFNN YSLSQPRHFC KACKRYWTHG GALRNVPVGG GCRKNKRAKM PVAASTGPPN 120 RPQPHLLAPP DPIPSISVQI SSSSYLGDAA SLYALQTAAA SSSSDMSPTL PIVASSNQIP 180 SFTSAAFDLQ SHLGSLGLDL SSKPQRDYEY YLGELQPLPS LSSTAMPLLN DHPLSGSSLQ 240 SPPLVAPSTK HPKRTEDYQA LCSFNELQAS GRNWRMDRMM KSVKLEGQTN DMINSNISSY 300 IDWQIPNPTE ISLDNFGPAA AMYWNSAIGS GSSWPENTNL GSSLTPLI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582403 | 2e-53 | KC582403.1 Sorghum bicolor dof6 protein (dof6) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009420614.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.4-like | ||||
TrEMBL | M0RGP5 | 0.0 | M0RGP5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P09190_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37590.1 | 8e-34 | DNA binding with one finger 2.4 |