PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P08720_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 302aa MW: 33912.8 Da PI: 10.0886

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P08720_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.5	9.9e-32	236	293	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ edp+++++tYegeHnh GSMUA_Achr10P08720_001 236 DEYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKQVERCLEDPSMLIVTYEGEHNHA 293 9**********************9988**************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	5.6E-16	187	232	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	8.4E-34	222	293	IPR003657	WRKY domain
PROSITE profile	PS50811	29.298	229	292	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-27	231	293	IPR003657	WRKY domain
SMART	SM00774	1.6E-38	234	294	IPR003657	WRKY domain
Pfam	PF03106	1.5E-27	236	292	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MEEVEKANRA AVESCHRILS LLSQPQDQVL SQDLLVETKE AVSRFRRLVS LLGNSIGHGR 60 VRMVHKVQYP TNHKIFSDNH SVLQIDLAPN PLQLLPRNII ENNIQVLDSK NDQRFQLHHQ 120 KCQPDMFTRS HSAINLKFES SNCIPSLSST RSFLSSLSMD RSVASLDGKP FHPIGGLAAS 180 SVHPPPKRRC ICRGVDGDGK CATSQRCHCS KRRKLRVKRS IKVPAISNKP ADTPPDEYSW 240 RKYGQKPIKG SPHPRGYYKC SSIRGCPARK QVERCLEDPS MLIVTYEGEH NHAGLLTQSA 300 QT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-18	236	292	16	71	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420667.1	0.0	PREDICTED: probable WRKY transcription factor 21
Swissprot	Q9SR07	2e-94	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	M0RGJ8	0.0	M0RGJ8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P08720_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	6e-89	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]