PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P08420_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 267aa MW: 30563.6 Da PI: 8.1983

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P08420_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165	2.7e-51	26	151	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 pGfrFhPtdeelv +yL++kv++k +++ ++ike+diyk++PwdLpk + +a+ekewyfF+ r +ky+++ r+nr+t sg+Wkatg GSMUA_Achr10P08420_001 26 LPGFRFHPTDEELVGFYLRRKVAKKAFSI-DIIKEIDIYKHDPWDLPKvMSSAGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATG 111 69*************************.99***********625556889*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s g+ +glkk+Lv+y+g+a kg+ktdW+mhe+rl GSMUA_Achr10P08420_001 112 IDRSICS-AGRCIGLKKSLVYYTGSAGKGTKTDWMMHEFRL 151 ***.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-56	24	177	IPR003441	NAC domain
PROSITE profile	PS51005	53.625	25	177	IPR003441	NAC domain
Pfam	PF02365	2.4E-25	27	151	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MEEKREKAGL QQGITVEEEE GKDVVLPGFR FHPTDEELVG FYLRRKVAKK AFSIDIIKEI 60 DIYKHDPWDL PKVMSSAGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT GIDRSICSAG 120 RCIGLKKSLV YYTGSAGKGT KTDWMMHEFR LPCTNTDNTC PTMQEAEIWT ICRIFQRSIA 180 APKRSWRDSI SKKKSDDGND EFRFDASSDC QTHASQRNSV AQAPMAALHS DVGPTPYAND 240 FFPDGNWDEL GRMVEFMTVQ NVFSYCK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-53	9	183	1	171	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-53	9	183	1	171	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-53	9	183	1	171	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-53	9	183	1	171	NO APICAL MERISTEM PROTEIN
4dul_A	8e-53	9	183	1	171	NAC domain-containing protein 19
4dul_B	8e-53	9	183	1	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420698.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	2e-82	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	M0RGG8	0.0	M0RGG8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P08420_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	9e-85	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]