PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P08280_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 292aa MW: 31318.8 Da PI: 8.5674

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P08280_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123	9.9e-39	59	117	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 ++++l+cprCdstntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk+k GSMUA_Achr10P08280_001 59 QQNNLRCPRCDSTNTKFCYYNNYNLAQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKV 117 67899***************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.7E-33	61	116	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-24	62	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	63	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	65	101	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MIQERLGGVV EEKNISHPGG LLIDHSSSSS PTSSVSSQSQ SSSSSSLSSA ASEQQQQQQQ 60 NNLRCPRCDS TNTKFCYYNN YNLAQPRHFC KTCRRYWTKG GALRNVPIGG GCRKSKVAPA 120 IALAGGYGRS GATKTKPAPS DLFLRSNLTS GLDNELPSGP ILCAPPHTSH LMTLFRSTTV 180 QNPNPNLNSA THRALFGATT QNNNITDIQD LCHRLKSSSS CYNDQLQTVA NDVGSFDPSS 240 CSTAASVITA AGMATSSPTP IMEHIRHSLG EFGHWNQALA WPDLPTPNVA FH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC186748	1e-69	AC186748.1 Musa acuminata clone MA4_8L21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420713.1	1e-170	PREDICTED: dof zinc finger protein DOF2.5-like
TrEMBL	M0RGF4	0.0	M0RGF4_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P08280_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	8e-33	TARGET OF MONOPTEROS 6