PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P08120_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 422aa    MW: 47507.2 Da    PI: 7.6825
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P08120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.49.5e-52141421128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                             + pGfrFhPtdeelv +yL++k+++k+ ++ e i+++diyk++PwdLp  +++++ekewyf+++rd+ky+++ r+nr+t +g+Wkat
  GSMUA_Achr10P08120_001  14 MLPGFRFHPTDEELVGFYLNRKIQQKPPSI-ELIRQLDIYKYDPWDLPeLATTTGEKEWYFYCPRDRKYKNSARPNRVTGAGFWKAT 99 
                             579************************999.89***************557778999****************************** PP

                     NAM  87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                             g+d++++s+ +++ +glkk+Lvfy+gra kg kt+W+mhe+rl
  GSMUA_Achr10P08120_001 100 GTDRPIYSSeGNKCIGLKKSLVFYRGRAAKGIKTEWMMHEFRL 142
                             ********956667***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-5713168IPR003441NAC domain
PROSITE profilePS5100557.06414168IPR003441NAC domain
PfamPF023652.6E-2516142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDERSDMEKG DDIMLPGFRF HPTDEELVGF YLNRKIQQKP PSIELIRQLD IYKYDPWDLP  60
ELATTTGEKE WYFYCPRDRK YKNSARPNRV TGAGFWKATG TDRPIYSSEG NKCIGLKKSL  120
VFYRGRAAKG IKTEWMMHEF RLPSLAHKNI SINVRTTDSW TICRIFKKPN TVAHRAAPPP  180
SWVSPVPDPN GAADLFSILR TAQSTQLSSE MLRHPLESSC YKPELPNAQV APTSFMFSPE  240
HMQIPSKSAM DVASMLLNAS PSIVGDVEEP LTSIDFGQQP MRSTASLANG EEGKICSLEN  300
SQWGFSLLPT ISGELNLAWE SPPYLLFLSL FYINWESSSF GEISRRADRI ESILDSKGGK  360
GYICCPPTAY LLACLPRYHR RPSSCASPSL GRLSSSFPTI AVAEEETICS QFYHLSTLLK  420
FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-521617219169NO APICAL MERISTEM PROTEIN
1ut4_B1e-521617219169NO APICAL MERISTEM PROTEIN
1ut7_A1e-521617219169NO APICAL MERISTEM PROTEIN
1ut7_B1e-521617219169NO APICAL MERISTEM PROTEIN
4dul_A1e-521617219169NAC domain-containing protein 19
4dul_B1e-521617219169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420916.10.0PREDICTED: protein FEZ-like
SwissprotQ9ZVH01e-91FEZ_ARATH; Protein FEZ
TrEMBLM0RGD80.0M0RGD8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P08120_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.17e-91NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]