PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P08120_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 422aa MW: 47507.2 Da PI: 7.6825

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P08120_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.4	9.5e-52	14	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 + pGfrFhPtdeelv +yL++k+++k+ ++ e i+++diyk++PwdLp +++++ekewyf+++rd+ky+++ r+nr+t +g+Wkat GSMUA_Achr10P08120_001 14 MLPGFRFHPTDEELVGFYLNRKIQQKPPSI-ELIRQLDIYKYDPWDLPeLATTTGEKEWYFYCPRDRKYKNSARPNRVTGAGFWKAT 99 579**********************999.89***********557778999************************** PP NAM 87 gkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+d++++s+ +++ +glkk+Lvfy+gra kg kt+W+mhe+rl GSMUA_Achr10P08120_001 100 GTDRPIYSSeGNKCIGLKKSLVFYRGRAAKGIKTEWMMHEFRL 142 ****956667*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.84E-57	13	168	IPR003441	NAC domain
PROSITE profile	PS51005	57.064	14	168	IPR003441	NAC domain
Pfam	PF02365	2.6E-25	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MDERSDMEKG DDIMLPGFRF HPTDEELVGF YLNRKIQQKP PSIELIRQLD IYKYDPWDLP 60 ELATTTGEKE WYFYCPRDRK YKNSARPNRV TGAGFWKATG TDRPIYSSEG NKCIGLKKSL 120 VFYRGRAAKG IKTEWMMHEF RLPSLAHKNI SINVRTTDSW TICRIFKKPN TVAHRAAPPP 180 SWVSPVPDPN GAADLFSILR TAQSTQLSSE MLRHPLESSC YKPELPNAQV APTSFMFSPE 240 HMQIPSKSAM DVASMLLNAS PSIVGDVEEP LTSIDFGQQP MRSTASLANG EEGKICSLEN 300 SQWGFSLLPT ISGELNLAWE SPPYLLFLSL FYINWESSSF GEISRRADRI ESILDSKGGK 360 GYICCPPTAY LLACLPRYHR RPSSCASPSL GRLSSSFPTI AVAEEETICS QFYHLSTLLK 420 FL

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MDERSDMEKG DDIMLPGFRF HPTDEELVGF YLNRKIQQKP PSIELIRQLD IYKYDPWDLP  60
ELATTTGEKE WYFYCPRDRK YKNSARPNRV TGAGFWKATG TDRPIYSSEG NKCIGLKKSL  120
VFYRGRAAKG IKTEWMMHEF RLPSLAHKNI SINVRTTDSW TICRIFKKPN TVAHRAAPPP  180
SWVSPVPDPN GAADLFSILR TAQSTQLSSE MLRHPLESSC YKPELPNAQV APTSFMFSPE  240
HMQIPSKSAM DVASMLLNAS PSIVGDVEEP LTSIDFGQQP MRSTASLANG EEGKICSLEN  300
SQWGFSLLPT ISGELNLAWE SPPYLLFLSL FYINWESSSF GEISRRADRI ESILDSKGGK  360
GYICCPPTAY LLACLPRYHR RPSSCASPSL GRLSSSFPTI AVAEEETICS QFYHLSTLLK  420
FL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-52	16	172	19	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-52	16	172	19	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-52	16	172	19	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-52	16	172	19	169	NO APICAL MERISTEM PROTEIN
4dul_A	1e-52	16	172	19	169	NAC domain-containing protein 19
4dul_B	1e-52	16	172	19	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420916.1	0.0	PREDICTED: protein FEZ-like
Swissprot	Q9ZVH0	1e-91	FEZ_ARATH; Protein FEZ
TrEMBL	M0RGD8	0.0	M0RGD8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P08120_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3366	38	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	7e-91	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]