PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P08070_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 297aa    MW: 33550.8 Da    PI: 6.3669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P08070_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl
  GSMUA_Achr10P08070_001 14 RGLWSPEEDEKLIRYITTYGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61
                            788*******************************************97 PP
2Myb_DNA-binding58.41.7e-1867111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rgr+T+eE++l++++++  G++ W+ Ia++++ gRt++++k++w+++
  GSMUA_Achr10P08070_001  67 RGRFTPEEEKLIINLHEIVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111
                             89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.212961IPR017930Myb domain
SuperFamilySSF466891.33E-3011108IPR009057Homeodomain-like
SMARTSM007171.8E-121363IPR001005SANT/Myb domain
PfamPF002494.6E-151461IPR001005SANT/Myb domain
CDDcd001671.52E-111761No hitNo description
PROSITE profilePS5129426.462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-2665116IPR009057Homeodomain-like
SMARTSM007175.1E-1866114IPR001005SANT/Myb domain
PfamPF002495.4E-1767111IPR001005SANT/Myb domain
CDDcd001671.12E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901430Biological Processpositive regulation of syringal lignin biosynthetic process
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT TYGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIN LHEIVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIHKPS  120
KAAQTATPSG FDHVQPVFST ADQFDAILHH NLPKPSAADP IFPPPPCPLF MFDVSAGDSG  180
SATGSTKEEF VQEVTTLTSD LWNPTHQQDQ AMPPFLAFTA CMESNYLPPL VDGMGGMVPC  240
CVADDEEASR HPFEKQELSE WVDSRQYSSP LIWDQVAGTS LGDAGFYTMT NQTKTHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420741.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLM0RGD30.0M0RGD3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P08070_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63910.11e-83myb domain protein 103