PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P07370_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NF-YC | ||||||||
Protein Properties | Length: 256aa MW: 28470 Da PI: 5.8052 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 57.9 | 2.3e-18 | 7 | 86 | 19 | 98 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P rikki++adedv +i+ +P+l+ska elf+ +l r++ + + +tl+ s ++++v+ + +dfl+ +v + GSMUA_Achr10P07370_001 7 TRFPAPRIKKIMQADEDVGKIALAVPILVSKALELFLQDLCDRTYEITLQRGAKTLNSSHLKQCVKAYNAYDFLTGVVNK 86 579***********************************************************************998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 8.8E-26 | 3 | 72 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 3.1E-19 | 18 | 88 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MRKKLGTRFP APRIKKIMQA DEDVGKIALA VPILVSKALE LFLQDLCDRT YEITLQRGAK 60 TLNSSHLKQC VKAYNAYDFL TGVVNKVPNL GGMEPCEDEK GICRRRKTLP HAGEVESNEE 120 LHLRSSKMPM RNSNVSPRGR GRGRGRGRGR PPTKARDARY IKYEDDDITF GEHDEEVPLG 180 QPGQPEGAEK ENTNQTVDPS SMSLVSGAAT TANETKLEKC SAWPLPDGVG DIGFEPSRLV 240 QLNMQVDEDE DYDNED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 6e-23 | 2 | 71 | 5 | 74 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 148 | RGRGRGRGRG |
2 | 139 | 149 | RGRGRGRGRGR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009420820.1 | 0.0 | PREDICTED: dr1-associated corepressor-like | ||||
TrEMBL | M0RG63 | 0.0 | M0RG63_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P07370_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2172 | 36 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 3e-50 | nuclear factor Y, subunit C11 |