PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P07370_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YC
Protein Properties Length: 256aa    MW: 28470 Da    PI: 5.8052
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P07370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC57.92.3e-187861998
                   NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                            +++P  rikki++adedv +i+  +P+l+ska elf+ +l  r++  + +   +tl+ s ++++v+  + +dfl+ +v +
  GSMUA_Achr10P07370_001  7 TRFPAPRIKKIMQADEDVGKIALAVPILVSKALELFLQDLCDRTYEITLQRGAKTLNSSHLKQCVKAYNAYDFLTGVVNK 86
                            579***********************************************************************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.8E-26372IPR009072Histone-fold
PfamPF008082.5E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.1E-191888IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MRKKLGTRFP APRIKKIMQA DEDVGKIALA VPILVSKALE LFLQDLCDRT YEITLQRGAK  60
TLNSSHLKQC VKAYNAYDFL TGVVNKVPNL GGMEPCEDEK GICRRRKTLP HAGEVESNEE  120
LHLRSSKMPM RNSNVSPRGR GRGRGRGRGR PPTKARDARY IKYEDDDITF GEHDEEVPLG  180
QPGQPEGAEK ENTNQTVDPS SMSLVSGAAT TANETKLEKC SAWPLPDGVG DIGFEPSRLV  240
QLNMQVDEDE DYDNED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A6e-23271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139148RGRGRGRGRG
2139149RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420820.10.0PREDICTED: dr1-associated corepressor-like
TrEMBLM0RG630.0M0RG63_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P07370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.13e-50nuclear factor Y, subunit C11