PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P06880_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 238aa MW: 26040.3 Da PI: 7.1279 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.6 | 1.9e-10 | 11 | 56 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT e ++ + +a + ++ + W++Ia+ ++ g++ +++k+++ GSMUA_Achr10P06880_001 11 SWTREQEKAFENALATHPEDcsdWWEKIAANVP-GKSIEDVKNHYEL 56 7*********************99*********.***********75 PP | |||||||
2 | Myb_DNA-binding | 38.5 | 2.7e-12 | 80 | 124 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky GSMUA_Achr10P06880_001 80 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVISRTPTQVASHAQKY 124 6*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.632 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 1.5E-6 | 8 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-5 | 9 | 58 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.05E-10 | 10 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-8 | 11 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.98E-10 | 11 | 58 | No hit | No description |
PROSITE profile | PS51294 | 17.144 | 72 | 129 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.66E-17 | 75 | 130 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-17 | 76 | 127 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.6E-10 | 77 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-11 | 80 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.55E-10 | 80 | 125 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-10 | 80 | 123 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MVMEEVSCSS SWTREQEKAF ENALATHPED CSDWWEKIAA NVPGKSIEDV KNHYELLLED 60 INGIDGKASK SDQERKKGIA WTEDEHRLFL LGLDKYGKGD WRSISRNFVI SRTPTQVASH 120 AQKYFIRLNS MNKERRRTSI HDITSVGNID ISTQPPITGQ TSSPVAATGS SINQSPQPYG 180 TAIGQPVGGP MMPAVGTPIN LPVPGAPHMA YGVRAVVPGA QVNIPPSTYP MPPTSCNR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009420853.1 | 1e-170 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_009420854.1 | 1e-170 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_009420857.1 | 1e-170 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_009420858.1 | 1e-170 | PREDICTED: transcription factor DIVARICATA | ||||
Refseq | XP_009420859.1 | 1e-170 | PREDICTED: transcription factor DIVARICATA | ||||
Swissprot | Q9FNN6 | 2e-91 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | M0RG15 | 1e-177 | M0RG15_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P06880_001 | 1e-178 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-93 | MYB family protein |
Publications ? help Back to Top | |||
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