PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P06060_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 473aa    MW: 50470.7 Da    PI: 6.5712
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P06060_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.31.6e-28165220359
                             -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             D ynWrKYGqK+vk+s+++rsYYrCt ++C++kkkve++  d++vve++Y+g+Hnh+
  GSMUA_Achr10P06060_001 165 DVYNWRKYGQKQVKSSDNARSYYRCTDSNCSAKKKVEHCP-DGTVVEVIYRGKHNHD 220
                             99**************************************.***************7 PP
2WRKY104.17.5e-33306363259
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             +Dgy+WrKYGqK+vkg+++prsYYrCt++gCpv+k+ver ++d k++ itYegeHnh+
  GSMUA_Achr10P06060_001 306 SDGYKWRKYGQKMVKGNHNPRSYYRCTHSGCPVRKHVERVSHDAKALLITYEGEHNHD 363
                             7********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.943158222IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-25160222IPR003657WRKY domain
SuperFamilySSF1182903.53E-22161222IPR003657WRKY domain
SMARTSM007746.0E-28163221IPR003657WRKY domain
PfamPF031061.7E-21165220IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-33293365IPR003657WRKY domain
SuperFamilySSF1182902.75E-28298365IPR003657WRKY domain
PROSITE profilePS5081132.971300365IPR003657WRKY domain
SMARTSM007744.8E-38305364IPR003657WRKY domain
PfamPF031069.3E-26307363IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAEEKASLAG TESARASSSS VEEEHSLPDP VAAVEGGGPE ASPSPSPSPA NADGRSFSQL  60
LAGAMASPAA SPRPAPIVTV PVVAVPCFLA PAALVESQGF SGQFAMTHQA VLATVTAQAQ  120
MQAQAACPSS SNSVTNSFPQ PLLSTVSPMP LQQLPPQTPK KTPGDVYNWR KYGQKQVKSS  180
DNARSYYRCT DSNCSAKKKV EHCPDGTVVE VIYRGKHNHD PPQKHRYTRD RGAQSSGPPV  240
ENESLDNPST EPDESDPSTC KAEQNSNNET PKQQLLSENS KSSSAPILKT IREYIVQTEI  300
DVRHLSDGYK WRKYGQKMVK GNHNPRSYYR CTHSGCPVRK HVERVSHDAK ALLITYEGEH  360
NHDQPTSKPA SDPPLTTSQS NVAAGMSSEQ LSTSNSLSVE QSSKESCQNI VVEEVAGDKK  420
LELGGDGALE SAQALLSIGF SSSSTEGTGR NNSESMKSPI LTENRAAASV QNT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26296365877Probable WRKY transcription factor 4
2lex_A2e-26296365877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2261960.0AC226196.1 Musa acuminata clone BAC MA4-125A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420380.10.0PREDICTED: probable WRKY transcription factor 4 isoform X1
TrEMBLM0RFT30.0M0RFT3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P06060_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58203455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.12e-59WRKY DNA-binding protein 32