PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P06040_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 653aa    MW: 71531.5 Da    PI: 6.0167
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P06040_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.91.3e-19203246145
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                             kpr++Wt eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+
  GSMUA_Achr10P06040_001 203 KPRVVWTVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTREN 246
                             79*******************.********************987 PP
2Response_reg81.43e-27191271109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl vdD+p+ ++ll+ +l + +y +v+++d++  al+ll+e++  +Dl++ D+ mp+mdG++ll+ i  e  +lp+i+++a+ge ++
  GSMUA_Achr10P06040_001  19 VLAVDDDPICLKLLEALLVRCQY-SVTTTDKAITALKLLRENKdkFDLVISDVHMPDMDGFKLLELIGLEM-DLPVIMLSANGETQT 103
                             799********************.***************888888**********************6644.8************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + +  Ga d+l Kp+ +eel++
  GSMUA_Achr10P06040_001 104 VMKGITHGACDYLLKPVRIEELRN 127
                             **********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.0E-1631653IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.9E-4216140No hitNo description
SuperFamilySSF521724.27E-3616141IPR011006CheY-like superfamily
SMARTSM004481.5E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.90418133IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.0E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.54E-2820133No hitNo description
Gene3DG3DSA:3.40.50.23002.9E-42184200No hitNo description
SuperFamilySSF466891.7E-12200254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-20201254IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-16203246IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MTVEERKGSR DQFPVGMRVL AVDDDPICLK LLEALLVRCQ YSVTTTDKAI TALKLLRENK  60
DKFDLVISDV HMPDMDGFKL LELIGLEMDL PVIMLSANGE TQTVMKGITH GACDYLLKPV  120
RIEELRNIWQ HVIRRRKFER RCDNDPDSRE DGQKAHIGSS EDGQGVADHN GQSNKKRKDQ  180
IEFDEDDSED NMQENEDPST QKKPRVVWTV ELHRKFVAAV NQLGIDKAVP KKILDLMNVE  240
KLTRENKYRL YLKRLSAVAG HQASLVAAVG GRNPSYLHMS SLSGLRNYST LGGSRQLPTL  300
GSLQLNGLGR INGPSTLGMH GLLPSQTVQL GMPRNSELEQ FQQPLLMQES KDHLPASLYG  360
SGLASGPCSG SFPNVPDNAL LLQENKQRNQ PGGLGKPSSV RMSSSSSELY KIDLPDVSQF  420
PNITDRCNDS WQGAVGSTDY SANTLHISLS HNDFSPGNIG GKFSSMNSHA ATKALDESPR  480
VAAGSGGQNR VRPLNENTIA MPAGVNKDPK FSNFNVIGNS GQKWDYTFNS NVISSTSSNS  540
LLPNLRITDA ATQCQTPGSV FSNKRLDVDA IGQVHFGPPL VTQNCIIDKS TGDSQLNFRS  600
EYALETASLP SGLNSDGCSF DDLVNAMIKT EHEEVAFTDM DLGCDAYSLG TCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-20199256164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2261960.0AC226196.1 Musa acuminata clone BAC MA4-125A12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420376.10.0PREDICTED: two-component response regulator ORR24
TrEMBLM0RFT10.0M0RFT1_MUSAM; Two-component response regulator
STRINGGSMUA_Achr10P06040_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-113response regulator 12