PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P05820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family CO-like
Protein Properties Length: 458aa    MW: 50378.2 Da    PI: 6.7832
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P05820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.7e-071354641
                zf-B_box  6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                            C+ ++   ++lfC+ +   lC  C  + H        H ++p
  GSMUA_Achr10P05820_001 13 CEYCGGAAATLFCRADAARLCVACDRHVHAAnalsgkHVRSP 54
                            ******99*******************996566777776665 PP
2zf-B_box28.53.2e-095397342
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvpl 42
                             ++C++++++++   C  ++  lC+dC   +H g     H +vp+
  GSMUA_Achr10P05820_001 53 SPICDDCGSQPAAARCVVDGRALCADCDWDSHGGgghhdHPRVPI 97
                            689*************************99974477655887776 PP
3CCT56.87.8e-20400449144
                     CCT   1 ReaallRYkeKrktRk......FeKkirYesRKavAesRpRvKGrFvkqa 44 
                             R +a+lRY+eKrktR+      ++K+irYesRK++A++R+RvKGrFvk++
  GSMUA_Achr10P05820_001 400 RGNAMLRYREKRKTRRhgsillYDKHIRYESRKVRADTRKRVKGRFVKST 449
                             7789***********65555559*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.6E-13855IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153855IPR000315B-box-type zinc finger
CDDcd000212.71E-71355No hitNo description
PfamPF006431.3E-51355IPR000315B-box-type zinc finger
PROSITE profilePS501199.5275197IPR000315B-box-type zinc finger
PfamPF006432.7E-65397IPR000315B-box-type zinc finger
CDDcd000211.37E-45482No hitNo description
SMARTSM0033615697IPR000315B-box-type zinc finger
PfamPF062036.2E-15400448IPR010402CCT domain
PROSITE profilePS5101710.874406448IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MAEGNGVGRR SGCEYCGGAA ATLFCRADAA RLCVACDRHV HAANALSGKH VRSPICDDCG  60
SQPAAARCVV DGRALCADCD WDSHGGGGHH DHPRVPIEGF SGCPTALELA ASWGFDLSSK  120
EASPPPPSLN PTADQLLSNW SSLDPILSKN HQNLKPLFHQ LVELAKTEVA ASAACDLSPS  180
TPHRTARGHE ELQESQPMPY TALLMSAPTE LQGSDRLVEE EVEEEVEEED ILWDCRLPHH  240
PAQIWDFNLG RLGDQKDSFD HEIAYGTNNE AFMIKNFNDL HKENSLETTK VLEDIGDARC  300
PSSNDDILST NVRHRQSQTL RTVSTATKRK HGSSCSPVEG PTASGNNTLT RIRPFVALSH  360
EHGSVGAKQI SFREKGEPLV GNETVQETKR LDSEMVAKNR GNAMLRYREK RKTRRHGSIL  420
LYDKHIRYES RKVRADTRKR VKGRFVKSTE ALDVVNNG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420339.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 14-like
TrEMBLM0RFQ90.0M0RFQ9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P05820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.21e-53B-box type zinc finger protein with CCT domain