PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P05080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 321aa    MW: 36071.4 Da    PI: 9.7563
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P05080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.5e-1763108147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg W + Ed +l+++v q+G+ +W++Ia+++  gR++k+c++rw++ 
  GSMUA_Achr10P05080_001  63 RGHWRPAEDAKLKELVSQYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 108
                             899*****************************.***********996 PP
2Myb_DNA-binding582.2e-18115158146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             r+++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  GSMUA_Achr10P05080_001 115 RKAFSEEEEERLLAAHRLYGNK-WAQIARLLP-GRTDNAVKNHWHV 158
                             789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.89958109IPR017930Myb domain
SMARTSM007171.9E-1462111IPR001005SANT/Myb domain
SuperFamilySSF466894.21E-2863156IPR009057Homeodomain-like
PfamPF002495.5E-1663108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2664116IPR009057Homeodomain-like
CDDcd001672.40E-1366107No hitNo description
PROSITE profilePS5129427.3110164IPR017930Myb domain
SMARTSM007174.6E-16114162IPR001005SANT/Myb domain
PfamPF002491.5E-15115157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-21117163IPR009057Homeodomain-like
CDDcd001675.99E-8126157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAPYELQHAG EMELFPAAPP TFLAVMEGHE NPENGKSYNK GKEEEGGHGI IHETEQQHKL  60
CARGHWRPAE DAKLKELVSQ YGPQNWNLIA EKLEGRSGKS CRLRWFNQLD PRINRKAFSE  120
EEEERLLAAH RLYGNKWAQI ARLLPGRTDN AVKNHWHVIM ARKQREQSNA RRSRNPPARS  180
PIFFPSQAQA LPRRKEVSTS NNACSGESGI SGTRDECDST CTDLSLNSLT SRIAPSFLNR  240
RRSPSQQPHS FDMLDGSDEK VVAAARNASY EKLGDSGGSF FSHGARPVAY HMRNALAHGQ  300
KRHGREKTRL PFIDFLGVGA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-33611635107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420242.10.0PREDICTED: myb-related protein 3R-1-like
SwissprotQ5NBM82e-71CSA_ORYSJ; Transcription factor CSA
TrEMBLM0RFI50.0M0RFI5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P05080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.12e-62myb domain protein 56
Publications ? help Back to Top
  1. Leonard LM,Follette VM
    Sexual functioning in women reporting a history of child sexual abuse: review of the empirical literature and clinical implications.
    Annu Rev Sex Res, 2002. 13: p. 346-88
    [PMID:12836736]
  2. Wang L,Li X,Chen Z
    Sulfated modification of the polysaccharides obtained from defatted rice bran and their antitumor activities.
    Int. J. Biol. Macromol., 2009. 44(2): p. 211-4
    [PMID:19135473]
  3. Wang L,Huang H,Wei Y,Li X,Chen Z
    Characterization and anti-tumor activities of sulfated polysaccharide SRBPS2a obtained from defatted rice bran.
    Int. J. Biol. Macromol., 2009. 45(4): p. 427-31
    [PMID:19549538]
  4. Zhang H, et al.
    Carbon starved anther encodes a MYB domain protein that regulates sugar partitioning required for rice pollen development.
    Plant Cell, 2010. 22(3): p. 672-89
    [PMID:20305120]
  5. Zhang H, et al.
    Mutation in CSA creates a new photoperiod-sensitive genic male sterile line applicable for hybrid rice seed production.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(1): p. 76-81
    [PMID:23256151]
  6. Zhu X, et al.
    Brassinosteroids promote development of rice pollen grains and seeds by triggering expression of Carbon Starved Anther, a MYB domain protein.
    Plant J., 2015. 82(4): p. 570-81
    [PMID:25754973]
  7. Li X, et al.
    Metabolic and transcriptomic signatures of rice floral organs reveal sugar starvation as a factor in reproductive failure under heat and drought stress.
    Plant Cell Environ., 2015. 38(10): p. 2171-92
    [PMID:25828772]
  8. Shaar-Moshe L,Hübner S,Peleg Z
    Identification of conserved drought-adaptive genes using a cross-species meta-analysis approach.
    BMC Plant Biol., 2015. 15: p. 111
    [PMID:25935420]