PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P04860_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 461aa MW: 50466.1 Da PI: 6.9113

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P04860_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15	4.6e-05	335	372	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L GSMUA_Achr10P04860_001 335 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 372 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.011	323	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-8	333	390	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.54E-5	333	377	No hit	No description
SuperFamily	SSF47459	3.14E-11	333	388	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MADQFQAGSC SSGTWWSSGF GGGPTMSASA SCSTELTNVA GSFNWATASD MFEPKSRSCD 60 ESPVSISNSS VTFQDIQNSD VSAPVIAAPM LDSVSQAMDF GLSSPTVEWS QSFFSGRGQN 120 SFHALLQEDV ISRPYAQRDW GVESNQTHIP LKNLNHCSLQ DHHVLLSSRI NSIPLLSASH 180 GLPSTLLQGH LEPESRLQGS FNDARTMKYE SSVDCREASN DSLQTSVGRL PQFMNASPPK 240 QQLQFSNDTP FWNPSASSVN EAHSNFHHAK PPQPFHNENS SHSKPVVKVS EELFLPSSAG 300 ARGSCPTLEK RSDSEPAAKK PRTETPSPLP TFKVRKEKLG DRITALQQLV SPFGKTDTAS 360 VLHETIEYIK FLHDQVRVLS APYLKKDHQT QQTKASDKPK DCEGRNLNLR SRGLCLIPIS 420 STFAVANEIP TDCWTPTFTG TFSKEEGKKT GGDPTKTVFW R

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MADQFQAGSC SSGTWWSSGF GGGPTMSASA SCSTELTNVA GSFNWATASD MFEPKSRSCD  60
ESPVSISNSS VTFQDIQNSD VSAPVIAAPM LDSVSQAMDF GLSSPTVEWS QSFFSGRGQN  120
SFHALLQEDV ISRPYAQRDW GVESNQTHIP LKNLNHCSLQ DHHVLLSSRI NSIPLLSASH  180
GLPSTLLQGH LEPESRLQGS FNDARTMKYE SSVDCREASN DSLQTSVGRL PQFMNASPPK  240
QQLQFSNDTP FWNPSASSVN EAHSNFHHAK PPQPFHNENS SHSKPVVKVS EELFLPSSAG  300
ARGSCPTLEK RSDSEPAAKK PRTETPSPLP TFKVRKEKLG DRITALQQLV SPFGKTDTAS  360
VLHETIEYIK FLHDQVRVLS APYLKKDHQT QQTKASDKPK DCEGRNLNLR SRGLCLIPIS  420
STFAVANEIP TDCWTPTFTG TFSKEEGKKT GGDPTKTVFW R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018674568.1	0.0	PREDICTED: transcription factor bHLH112-like isoform X2
TrEMBL	M0RFG3	0.0	M0RFG3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P04860_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	2e-51	bHLH family protein