PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P04600_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 500aa    MW: 54983.1 Da    PI: 7.6483
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P04600_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.36.2e-231182051499
                             T-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                      B3  14 grlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                             g +++p+ +ae++      g +++  +t+t+ d +g+sW++++ yr++++r++lt+GW++Fv++++L +gD++vF+   +s+++ +v
  GSMUA_Achr10P04600_001 118 GGFSVPRFCAESIfppldlG-DPTPAQTVTIHDVHGKSWTFRHVYRGTPRRHLLTSGWSNFVNSKRLISGDSLVFM---NSSGKVFV 200
                             5689999999999*****64.445557*************************************************...799999** PP

                             EEE-S CS
                      B3  95 kvfrk 99 
                             +++r+
  GSMUA_Achr10P04600_001 201 GIRRT 205
                             ***97 PP
2Auxin_resp40.31.4e-142292862783
              Auxin_resp  27 kvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             + e v +a++v+++vGmR++m++et ds++ ++  G v+ v+  d   W++S+W +L+
  GSMUA_Achr10P04600_001 229 PQEAVDAATRVSWTVGMRVRMSVETGDSARMNWfNGSVTKVTINDAGLWRRSPWGMLQ 286
                             56789999*************************9********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010198.2E-16108206IPR003340B3 DNA binding domain
CDDcd100172.39E-16117204No hitNo description
Gene3DG3DSA:2.40.330.103.8E-26118209IPR015300DNA-binding pseudobarrel domain
PfamPF023621.9E-20118205IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-22118209IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.21144206IPR003340B3 DNA binding domain
PfamPF065073.7E-12230286IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEKSAATGEE LQLVDPRVWK ASAGISSRIA AVGSSVYYFP QGHADQASSL PDFSAVPCPR  60
AYVRCRISSV RLHANRSTDE VFARISLDPR APPAASPVQP QTEFPFSYSH AAMPTLGGGF  120
SVPRFCAESI FPPLDLGDPT PAQTVTIHDV HGKSWTFRHV YRGTPRRHLL TSGWSNFVNS  180
KRLISGDSLV FMNSSGKVFV GIRRTSRSCG PATLNVEMEE KHGRFSRMPQ EAVDAATRVS  240
WTVGMRVRMS VETGDSARMN WFNGSVTKVT INDAGLWRRS PWGMLQVLSL IDSLICESID  300
TKLYKKQFVV ITDMFIEIIT WDDPEVLQKV RDVSPWQVEC FVAGPQGEIP RSIRNILDEQ  360
ESSLLPDDKE DSVLTGFKSR IIGSLSPSVS NSSLFPVGMQ GARHDFFHTA GLFDSKSNGN  420
QTFLNSVHGV NAPEKSDVPV EPSIRIPSQS RGSSPPRQGS IQALDRETLE PASNQVTKAS  480
IQLFGQVIHV GNHIDKDADN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-45733944388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419389.11e-134PREDICTED: auxin response factor 17-like
TrEMBLM0RFD70.0M0RFD7_MUSAM; Auxin response factor
STRINGGSMUA_Achr10P04600_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.12e-70auxin response factor 16