PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P04590_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 284aa    MW: 31801.7 Da    PI: 8.0248
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P04590_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-165198148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr10P04590_001 51 KGAWTKEEDLRLISYINAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 98
                            79******************************99************97 PP
2Myb_DNA-binding61.22.2e-19104148147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg++T+eEdel+++++ +lG++ W+ Iar+++ gRt++++k++w+++
  GSMUA_Achr10P04590_001 104 RGNFTEEEDELIINLHSLLGNK-WSVIARRLP-GRTDNEIKNYWNTH 148
                             89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0214698IPR017930Myb domain
SMARTSM007175.9E-1350100IPR001005SANT/Myb domain
SuperFamilySSF466892.46E-2950145IPR009057Homeodomain-like
PfamPF002493.9E-155198IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2352105IPR009057Homeodomain-like
CDDcd001671.07E-95398No hitNo description
PROSITE profilePS5129428.74899153IPR017930Myb domain
SMARTSM007172.6E-18103151IPR001005SANT/Myb domain
PfamPF002492.9E-17104148IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-28106153IPR009057Homeodomain-like
CDDcd001672.40E-13106149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MPTRGSLNNP YREDVCMVED AVWHRVLVLW SWEYDDGSLN RSWWDGAHTN KGAWTKEEDL  60
RLISYINAHG EGCWRSLPKA AGLLRCGKSC RLRWINYLRP DLKRGNFTEE EDELIINLHS  120
LLGNKWSVIA RRLPGRTDNE IKNYWNTHIR RKLLGRGLDP QTHRPIGGDS QSTASCEQHA  180
CSGVTMVEGR RWCPDLDLTM GLPYASPRSS TSSEVLTTPA EAEAEATTPA SVLPHVRTIC  240
FCYHLGFRSS QVCSCQTSST GPVLGGRAAN HSSRASSSAR DQSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-295015326128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420186.11e-175PREDICTED: myb-related protein 308-like
SwissprotP813933e-79MYB08_ANTMA; Myb-related protein 308
TrEMBLM0RFD60.0M0RFD6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P04590_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.15e-78myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]