PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P04570_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 255aa    MW: 28458.2 Da    PI: 8.6614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P04570_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.6e-5081321128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                             lppGfrFhPtdeelv +yL++k+++ ++++  +i+e+d+yk++Pw+Lp  ++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg
  GSMUA_Achr10P04570_001   8 LPPGFRFHPTDEELVAHYLCRKCADLPVPV-PIIAELDLYKYDPWQLPGLASYGEKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATG 93 
                             79****************************.88***************7777799******************************** PP

                     NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              dk+v +   +   +kk Lvfy g+apkgekt+W+mheyrl
  GSMUA_Achr10P04570_001  94 ADKPVGT--PRPLAIKKALVFYAGKAPKGEKTNWIMHEYRL 132
                             *****99..7789**************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-615158IPR003441NAC domain
PROSITE profilePS5100559.5498158IPR003441NAC domain
PfamPF023651.1E-269132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSGGDLQLPP GFRFHPTDEE LVAHYLCRKC ADLPVPVPII AELDLYKYDP WQLPGLASYG  60
EKEWYFFSPR DRKYPNGSRP NRSAGSGYWK ATGADKPVGT PRPLAIKKAL VFYAGKAPKG  120
EKTNWIMHEY RLADVDRSAR KNNSLRLDDW VLCRIYNKKG NSGSEKPGNP VSHPLHADSS  180
CSEHVLSPEF VCEREVQSQP RWRATDRDKA VGLGNPAAAY NANANSAFTQ FEPGLLSSGL  240
GDPFQDILMY LGKPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-77415911169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0543861e-134BT054386.2 Zea mays full-length cDNA clone ZM_BFc0017P07 mRNA, complete cds.
GenBankBT0605341e-134BT060534.2 Zea mays full-length cDNA clone ZM_BFb0012O13 mRNA, complete cds.
GenBankBT0632381e-134BT063238.2 Zea mays full-length cDNA clone ZM_BFc0041I22 mRNA, complete cds.
GenBankBT0650821e-134BT065082.2 Zea mays full-length cDNA clone ZM_BFb0054J18 mRNA, complete cds.
GenBankBT0676171e-134BT067617.2 Zea mays full-length cDNA clone ZM_BFc0107G18 mRNA, complete cds.
GenBankBT0692911e-134BT069291.2 Zea mays full-length cDNA clone ZM_BFc0043P04 mRNA, complete cds.
GenBankBT0853751e-134BT085375.2 Zea mays full-length cDNA clone ZM_BFc0005B20 mRNA, complete cds.
GenBankBT0858921e-134BT085892.2 Zea mays full-length cDNA clone ZM_BFc0076P05 mRNA, complete cds.
GenBankEU9562421e-134EU956242.1 Zea mays clone 1559533 NAC domain-containing protein 48 mRNA, complete cds.
GenBankHQ8587131e-134HQ858713.1 Zea mays clone UT1169 NAC transcription factor mRNA, partial cds.
GenBankKP9007661e-134KP900766.1 Zea mays NAC protein Zma3086 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420184.11e-172PREDICTED: NAC domain-containing protein 48-like
SwissprotQ390131e-112NAC2_ARATH; NAC domain-containing protein 2
TrEMBLM0RFD40.0M0RFD4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P04570_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34173782
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-112NAC family protein
Publications ? help Back to Top
  1. Florentin A,Damri M,Grafi G
    Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization.
    Dev. Dyn., 2013. 242(10): p. 1121-33
    [PMID:23798027]
  2. Jensen MK, et al.
    ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.
    FEBS Open Bio, 2013. 3: p. 321-7
    [PMID:23951554]
  3. Wang YX
    Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress.
    Mol. Biol. Rep., 2013. 40(11): p. 6451-8
    [PMID:24057250]
  4. Yang X, et al.
    Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis.
    Plant Cell Rep., 2015. 34(6): p. 943-58
    [PMID:25666276]
  5. Du Q,Wang H
    The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation.
    Plant Signal Behav, 2015. 10(10): p. e1078955
    [PMID:26340415]
  6. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  7. Liu Y,Sun J,Wu Y
    Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice.
    J. Plant Res., 2016. 129(5): p. 955-962
    [PMID:27216423]
  8. Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR
    Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining.
    PLoS ONE, 2016. 11(9): p. e0162327
    [PMID:27618630]
  9. Zhao J,Missihoun TD,Bartels D
    The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana.
    Planta, 2018. 248(4): p. 1017-1027
    [PMID:30027414]