PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P04570_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 28458.2 Da PI: 8.6614 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.5 | 1.6e-50 | 8 | 132 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdeelv +yL++k+++ ++++ +i+e+d+yk++Pw+Lp ++ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg GSMUA_Achr10P04570_001 8 LPPGFRFHPTDEELVAHYLCRKCADLPVPV-PIIAELDLYKYDPWQLPGLASYGEKEWYFFSPRDRKYPNGSRPNRSAGSGYWKATG 93 79****************************.88***************7777799******************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk+v + + +kk Lvfy g+apkgekt+W+mheyrl GSMUA_Achr10P04570_001 94 ADKPVGT--PRPLAIKKALVFYAGKAPKGEKTNWIMHEYRL 132 *****99..7789**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-61 | 5 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.549 | 8 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 9 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSGGDLQLPP GFRFHPTDEE LVAHYLCRKC ADLPVPVPII AELDLYKYDP WQLPGLASYG 60 EKEWYFFSPR DRKYPNGSRP NRSAGSGYWK ATGADKPVGT PRPLAIKKAL VFYAGKAPKG 120 EKTNWIMHEY RLADVDRSAR KNNSLRLDDW VLCRIYNKKG NSGSEKPGNP VSHPLHADSS 180 CSEHVLSPEF VCEREVQSQP RWRATDRDKA VGLGNPAAAY NANANSAFTQ FEPGLLSSGL 240 GDPFQDILMY LGKPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-77 | 4 | 159 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054386 | 1e-134 | BT054386.2 Zea mays full-length cDNA clone ZM_BFc0017P07 mRNA, complete cds. | |||
GenBank | BT060534 | 1e-134 | BT060534.2 Zea mays full-length cDNA clone ZM_BFb0012O13 mRNA, complete cds. | |||
GenBank | BT063238 | 1e-134 | BT063238.2 Zea mays full-length cDNA clone ZM_BFc0041I22 mRNA, complete cds. | |||
GenBank | BT065082 | 1e-134 | BT065082.2 Zea mays full-length cDNA clone ZM_BFb0054J18 mRNA, complete cds. | |||
GenBank | BT067617 | 1e-134 | BT067617.2 Zea mays full-length cDNA clone ZM_BFc0107G18 mRNA, complete cds. | |||
GenBank | BT069291 | 1e-134 | BT069291.2 Zea mays full-length cDNA clone ZM_BFc0043P04 mRNA, complete cds. | |||
GenBank | BT085375 | 1e-134 | BT085375.2 Zea mays full-length cDNA clone ZM_BFc0005B20 mRNA, complete cds. | |||
GenBank | BT085892 | 1e-134 | BT085892.2 Zea mays full-length cDNA clone ZM_BFc0076P05 mRNA, complete cds. | |||
GenBank | EU956242 | 1e-134 | EU956242.1 Zea mays clone 1559533 NAC domain-containing protein 48 mRNA, complete cds. | |||
GenBank | HQ858713 | 1e-134 | HQ858713.1 Zea mays clone UT1169 NAC transcription factor mRNA, partial cds. | |||
GenBank | KP900766 | 1e-134 | KP900766.1 Zea mays NAC protein Zma3086 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009420184.1 | 1e-172 | PREDICTED: NAC domain-containing protein 48-like | ||||
Swissprot | Q39013 | 1e-112 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | M0RFD4 | 0.0 | M0RFD4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P04570_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3417 | 37 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-112 | NAC family protein |