PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P04530_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 257aa    MW: 29562.6 Da    PI: 6.2549
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P04530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.84.3e-5361331128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             lppGfrFhPtd elv++yLk+k+ gk++++ e+i+ev++yk+ PwdLp k ++++++ ewyfF++rdkky++g+r+nrat  gyWka
  GSMUA_Achr10P04530_001   6 LPPGFRFHPTDVELVWYYLKRKIMGKPFHF-EAIAEVELYKFAPWDLPdKsHLRSKDLEWYFFCPRDKKYPNGSRTNRATGIGYWKA 91 
                             79***************************9.89**************95346666777***************************** PP

                     NAM  86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             tg+d+ v++ ++++vg+kktLvfy+g+ +kg++tdWvm eyrl
  GSMUA_Achr10P04530_001  92 TGRDRYVIH-NSQTVGMKKTLVFYEGKPSKGKRTDWVMYEYRL 133
                             *********.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-614156IPR003441NAC domain
PROSITE profilePS5100557.2626156IPR003441NAC domain
PfamPF023657.9E-287133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTKAFLPPGF RFHPTDVELV WYYLKRKIMG KPFHFEAIAE VELYKFAPWD LPDKSHLRSK  60
DLEWYFFCPR DKKYPNGSRT NRATGIGYWK ATGRDRYVIH NSQTVGMKKT LVFYEGKPSK  120
GKRTDWVMYE YRLLNRQLVE AGFSQEAYVL CKIFQKSGPG PKIGERYCAP FNEEDWEDDT  180
ITENSFPLPS VSCPNPEPLV NQTILLDPLS QQPVASSHVE VPSDRDLLDA DGIWLAEVAE  240
ILNSSPHIEA AGDTFMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-53116215174NAC domain-containing protein 19
3swm_B4e-53116215174NAC domain-containing protein 19
3swm_C4e-53116215174NAC domain-containing protein 19
3swm_D4e-53116215174NAC domain-containing protein 19
3swp_A4e-53116215174NAC domain-containing protein 19
3swp_B4e-53116215174NAC domain-containing protein 19
3swp_C4e-53116215174NAC domain-containing protein 19
3swp_D4e-53116215174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009420175.10.0PREDICTED: NAC domain-containing protein 82
RefseqXP_009420176.10.0PREDICTED: NAC domain-containing protein 82
RefseqXP_009420177.10.0PREDICTED: NAC domain-containing protein 82
RefseqXP_009420178.10.0PREDICTED: NAC domain-containing protein 82
RefseqXP_009420179.10.0PREDICTED: NAC domain-containing protein 82
RefseqXP_018675465.10.0PREDICTED: NAC domain-containing protein 82
SwissprotQ84K002e-78NAC78_ARATH; NAC domain-containing protein 78
TrEMBLM0RFD00.0M0RFD0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P04530_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47313664
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.17e-81NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]