PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr10P04320_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 339aa MW: 38233 Da PI: 7.8498

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr10P04320_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160	9.5e-50	22	147	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg GSMUA_Achr10P04320_001 22 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITLLDLYHYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGA 107 79*************************.89***********8778899***************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+++ +++++ +glkktLvfy+g+apkg +++W+m+eyrl GSMUA_Achr10P04320_001 108 DRTIRNESNRSIGLKKTLVFYSGKAPKGIRSSWIMNEYRL 147 ************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-55	20	167	IPR003441	NAC domain
PROSITE profile	PS51005	55.354	21	168	IPR003441	NAC domain
Pfam	PF02365	7.6E-25	23	147	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MAIAAAMEED EGKDGHENDV VMPGFRFHPT EEELIEFYLR RKVEGKRFNV ELITLLDLYH 60 YDPWELPALA AIGEKEWFFY VPRDRKYRNG DRPNRVTASG YWKATGADRT IRNESNRSIG 120 LKKTLVFYSG KAPKGIRSSW IMNEYRLPHS DTDQYRKAEI SICRVYKRAG VEDHHRLPAT 180 LASRSSSSRG TAAVETAQHA RGGRYALPKP IVYGSTSSVA NSLSSTTTST EEDGASFRRS 240 NNNIAGLTPT LSILTSTGPS MATHMIDELN RLVGFNENYV NNPNQLLHLP SQAQLLHLPT 300 QAQLLPFNAL PLPLPAASDK LWEWNPLQEM GREYYAAFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-54	23	168	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-54	23	168	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-54	23	168	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-54	23	168	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	4e-54	23	168	19	165	NAC domain-containing protein 19
4dul_B	4e-54	23	168	19	165	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420148.1	0.0	PREDICTED: NAC domain-containing protein 35-like isoform X1
Swissprot	Q9ZVP8	1e-102	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	M0RFA9	0.0	M0RFA9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr10P04320_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2826	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-102	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]