PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr10P03710_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 212aa MW: 24039.8 Da PI: 6.3607 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.4e-17 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed++l++ v++lG ++W+ Ia+ g++Rt+k+c+ rw +yl GSMUA_Achr10P03710_001 10 RGPWTEQEDLQLACFVALLGERRWDFIAQASGLNRTGKSCRMRWVNYL 57 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.4e-17 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+Tt+E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ GSMUA_Achr10P03710_001 63 RGRMTTQEEHLVLELHSRWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 108 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.802 | 5 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-19 | 5 | 60 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.25E-28 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.9E-15 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.73E-10 | 12 | 57 | No hit | No description |
PROSITE profile | PS51294 | 25.118 | 58 | 112 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-22 | 61 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-14 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-15 | 63 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.78E-10 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 212 aa Download sequence Send to blast |
MVMVKEELRR GPWTEQEDLQ LACFVALLGE RRWDFIAQAS GLNRTGKSCR MRWVNYLHPS 60 LKRGRMTTQE EHLVLELHSR WGNRWSRIAR KLPGRTDNEI KNYWRTHMRK RAQEEKRNCS 120 PSATSSAPPA DDLPTRSEVA AESQLNGNGD GGNADSVDEV WDEIALSSGD RRDEAGGYAC 180 TPLTSATPVW ECCSGSLWKT EDEELHGVSF GF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-27 | 7 | 112 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-26 | 3 | 112 | 51 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-26 | 3 | 112 | 51 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009420103.1 | 1e-157 | PREDICTED: myb-related protein MYBAS2-like | ||||
Swissprot | Q4JL84 | 1e-70 | MYB59_ARATH; Transcription factor MYB59 | ||||
TrEMBL | M0RF48 | 1e-156 | M0RF48_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P03710_001 | 1e-156 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G59780.3 | 3e-70 | myb domain protein 59 |
Publications ? help Back to Top | |||
---|---|---|---|
|