PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P02440_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GRAS | ||||||||
Protein Properties | Length: 599aa MW: 67373.2 Da PI: 6.4072 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 150.4 | 1.7e-46 | 286 | 428 | 1 | 146 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 l++lL+ c +av+++d + a++lL+++++++s dgd qRla++f+ +L+arla+++s +y+al +++t+ ++ l+a++l+ + GSMUA_Achr10P02440_001 286 LRTLLILCSQAVAADDRRTANELLKQIRQHSSRDGDGSQRLASFFADGLEARLAGTGSLIYHALVAKRTT---ATDILKAYHLYLAA 369 5789*************************************************************99999...9************* PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTg 146 +P+ ++sh+ Nq+Il+ e++++vHiiDf+i G+QWp+L+q L++R++gpp+lRiT+ GSMUA_Achr10P02440_001 370 CPFKRVSHFFSNQTILNLSEKASTVHIIDFGIYFGFQWPCLIQRLSTREGGPPKLRITA 428 **********************************************************8 PP | |||||||
2 | GRAS | 128.7 | 6.5e-40 | 429 | 563 | 184 | 318 |
GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 +++e++++e+L+++++E+++Vn+ ++ +l+de+v ++s+r++vL+++++++P+v+++ + +++++ F++rf eal ++salfd+ GSMUA_Achr10P02440_001 429 SKWETIRVEDLHIDKDEVVVVNCLYRFRNLVDETVIVDSPRNRVLNTIRKMNPDVFIHGVVNGSYSAPFFVTRFREALFHFSALFDM 515 6899*********************************************************************************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318 le+++pr++e+r +Er l+gre+ nv+aceg+er+er et+++W+ r GSMUA_Achr10P02440_001 516 LETNVPRDDEQRLLIERDLFGREALNVIACEGSERVERPETYKQWQVR 563 *********************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 35.994 | 260 | 599 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.0E-44 | 286 | 428 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-37 | 429 | 563 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 599 aa Download sequence Send to blast |
MVMDSGLHEL FGMMSGLSYD DSHSEQNIFR ALGLGEPQPH LGHSNYAVLP QMSSTTNTSS 60 NPTSTVSTST EGEGLEDGDI FYSDMALRYI SRMLMEEDID EKVSTYKEEL ALRAAEKPFY 120 DILGQKYPPS LGGSSSSSST EEPLANIVVS PSLFIGGMPA WHFKRGVEEA RKFLPSNDKL 180 VINLESNDLS SSREPRSRKN PNSEDLDLAE GRSNKQSAVF GEGELRSEMF DMVLLCQGDK 240 CTQKIFDLRE AMQNIASKND QNGPAKVASS GKARGKKQTK KEVVDLRTLL ILCSQAVAAD 300 DRRTANELLK QIRQHSSRDG DGSQRLASFF ADGLEARLAG TGSLIYHALV AKRTTATDIL 360 KAYHLYLAAC PFKRVSHFFS NQTILNLSEK ASTVHIIDFG IYFGFQWPCL IQRLSTREGG 420 PPKLRITASK WETIRVEDLH IDKDEVVVVN CLYRFRNLVD ETVIVDSPRN RVLNTIRKMN 480 PDVFIHGVVN GSYSAPFFVT RFREALFHFS ALFDMLETNV PRDDEQRLLI ERDLFGREAL 540 NVIACEGSER VERPETYKQW QVRSCYHKDF VIDEDSRWLI QGWKGRIIYA VSAWKPSGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-35 | 293 | 596 | 25 | 379 | Protein SCARECROW |
5b3h_D | 2e-35 | 293 | 596 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009409514.1 | 0.0 | PREDICTED: scarecrow-like protein 9 | ||||
Swissprot | O80933 | 1e-155 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | M0RES1 | 0.0 | M0RES1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P02440_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-156 | GRAS family protein |