PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P01640_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 286aa    MW: 32268.1 Da    PI: 5.9234
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P01640_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd  lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  GSMUA_Achr10P01640_001 14 KGPWTPEEDIVLVSYIQEHGPGNWRSVPTSTGLMRCSKSCRLRWTNYL 61
                            79********************************************97 PP

2Myb_DNA-binding46.77.2e-1567112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++T+ E+  ++++  +lG++ W++Ia++++ +Rt++++k++w+++l
  GSMUA_Achr10P01640_001  67 RGNFTPYEERVIIRLQSLLGNR-WASIASHLP-RRTDNDIKNYWNTHL 112
                             89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.999961IPR017930Myb domain
SuperFamilySSF466894.03E-3011108IPR009057Homeodomain-like
SMARTSM007174.4E-121363IPR001005SANT/Myb domain
PfamPF002493.2E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-231568IPR009057Homeodomain-like
CDDcd001672.28E-101661No hitNo description
PROSITE profilePS5129425.56362116IPR017930Myb domain
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
PfamPF002491.4E-1367112IPR001005SANT/Myb domain
CDDcd001671.49E-1069112No hitNo description
Gene3DG3DSA:1.10.10.609.3E-2569116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MGRPPFCDNI GIKKGPWTPE EDIVLVSYIQ EHGPGNWRSV PTSTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TPYEERVIIR LQSLLGNRWA SIASHLPRRT DNDIKNYWNT HLKKKINKIQ  120
GAADADGKKP SSDARPVCHD YNSRYASSSE NISRLLQGWM QSSPTVDAPG KLKQSFFTAD  180
DDDDETSNII SALAAASLTE KSQAESDRRC GATKTHDDFV LLHSFENMDI VPWENTGEET  240
RPFQHARADD AEAQLGAESE QPPLFLSENW LLDEALVQEL TMSFLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-25911622128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419866.10.0PREDICTED: myb-related protein 306-like
SwissprotB3VTV72e-92MYB60_VITVI; Transcription factor MYB60
TrEMBLM0REJ10.0M0REJ1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P01640_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-88myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]