PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P01640_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 286aa MW: 32268.1 Da PI: 5.9234 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g+W++++ g+ R+ k+c++rw +yl GSMUA_Achr10P01640_001 14 KGPWTPEEDIVLVSYIQEHGPGNWRSVPTSTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.7 | 7.2e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ +lG++ W++Ia++++ +Rt++++k++w+++l GSMUA_Achr10P01640_001 67 RGNFTPYEERVIIRLQSLLGNR-WASIASHLP-RRTDNDIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.999 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.28E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.563 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-10 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.3E-25 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGRPPFCDNI GIKKGPWTPE EDIVLVSYIQ EHGPGNWRSV PTSTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TPYEERVIIR LQSLLGNRWA SIASHLPRRT DNDIKNYWNT HLKKKINKIQ 120 GAADADGKKP SSDARPVCHD YNSRYASSSE NISRLLQGWM QSSPTVDAPG KLKQSFFTAD 180 DDDDETSNII SALAAASLTE KSQAESDRRC GATKTHDDFV LLHSFENMDI VPWENTGEET 240 RPFQHARADD AEAQLGAESE QPPLFLSENW LLDEALVQEL TMSFLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 14 | 116 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 1e-25 | 9 | 116 | 22 | 128 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009419866.1 | 0.0 | PREDICTED: myb-related protein 306-like | ||||
Swissprot | B3VTV7 | 2e-92 | MYB60_VITVI; Transcription factor MYB60 | ||||
TrEMBL | M0REJ1 | 0.0 | M0REJ1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P01640_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP229 | 38 | 296 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 1e-88 | myb domain protein 60 |
Publications ? help Back to Top | |||
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