PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P01620_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 288aa    MW: 31898.4 Da    PI: 4.9645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P01620_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd  lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  GSMUA_Achr10P01620_001 14 KGPWTPEEDIVLVSYIREHGPGNWRSVPTSTGLMRCSKSCRLRWTNYL 61
                            79********************************************97 PP
2Myb_DNA-binding47.73.5e-1567112148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                             rg++T+ E+  ++++  +lG++ W++Ia++++  Rt++++k++w+++l
  GSMUA_Achr10P01620_001  67 RGNFTPHEERVIIHLQSLLGNR-WASIASYLP-QRTDNDIKNYWNTHL 112
                             89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-23564IPR009057Homeodomain-like
PROSITE profilePS5129418.403961IPR017930Myb domain
SuperFamilySSF466891.76E-3011108IPR009057Homeodomain-like
SMARTSM007173.9E-121363IPR001005SANT/Myb domain
PfamPF002494.5E-151461IPR001005SANT/Myb domain
CDDcd001673.98E-111661No hitNo description
PROSITE profilePS5129424.96162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2465116IPR009057Homeodomain-like
SMARTSM007171.7E-1466114IPR001005SANT/Myb domain
PfamPF002492.3E-1367112IPR001005SANT/Myb domain
CDDcd001676.43E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGRPPCCDNI GIKKGPWTPE EDIVLVSYIR EHGPGNWRSV PTSTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEERVIIH LQSLLGNRWA SIASYLPQRT DNDIKNYWNT HLKKKINKIQ  120
GAADADGKKP SSDARPDCHD YKSRYASSSE NISRLLQGSM QSSPTVNAPG KSKESCSTAD  180
DDDDENSNII TALTAASLTE NSQAEGDRGS CAPMTHDDFD LLHSFESMDT VPRENTGTET  240
PFQPAEADDA EAQLGAESDQ PPLFLLENWL LDEASAQHLD IIEVVLAK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
1mse_C2e-25141164105C-Myb DNA-Binding Domain
1msf_C2e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419868.10.0PREDICTED: myb-related protein 306-like
SwissprotB3VTV74e-97MYB60_VITVI; Transcription factor MYB60
TrEMBLM0REI90.0M0REI9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P01620_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.16e-94myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]