PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P00810_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 311aa    MW: 34203.1 Da    PI: 4.6204
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P00810_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.1e-32118174258
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                             dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers edp+++++tYeg H h
  GSMUA_Achr10P00810_001 118 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSMEDPELLIVTYEGLHLH 174
                             8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-30111175IPR003657WRKY domain
PROSITE profilePS5081127.714112177IPR003657WRKY domain
SuperFamilySSF1182901.01E-26115175IPR003657WRKY domain
SMARTSM007746.2E-37117176IPR003657WRKY domain
PfamPF031064.6E-26118174IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEEVAEAETS WFDDFDYPQV EIMTELQEDT SSQFISSEVA ESQSVAQQES IINKLISAAY  60
SGPTISDIES ALSLTFQSGD SSGRCSARPI VCSPDKGLGK MEHKYVFRIK TCGNGLDDDG  120
YKWRKYGQKS IKNSPNPRSY YRCTNPRCNA KKQVERSMED PELLIVTYEG LHLHYTYSHL  180
LFTRPQDYSD TGLHVAKKLK CQSTAAEPAR QSPPAIRQSQ PAVDGTVVGP PSAGQFTVED  240
VLQHGLLDDV LQSSEGLLED VVPLLVRKPC NSTTSSYDPC PSSPASSPSY SSLSWTTGSA  300
FLDLDVLSTI M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-211181741571WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674960.10.0PREDICTED: probable WRKY transcription factor 49 isoform X1
TrEMBLM0REA80.0M0REA8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P00810_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75253551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.17e-45WRKY DNA-binding protein 49