PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P00660_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 29657.1 Da PI: 9.9272 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.5 | 2.3e-11 | 36 | 84 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 grWT+eE +++ a + + ++ +W ++a+ ++ g+t+ ++ s+++++l GSMUA_Achr10P00660_001 36 GRWTPEENKRFEYALATFDKDtpdRWLKVAASIP-GKTPSDVESHYRDLL 84 9*********************************.************986 PP | |||||||
2 | Myb_DNA-binding | 41.3 | 3.5e-13 | 110 | 154 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+++++ + +++G+g+W+ I+r + +R + q+ s+ qky GSMUA_Achr10P00660_001 110 PWTEDEHKRFLLGLQKHGKGDWRNISRNFVITRNPTQVASHAQKY 154 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 7.584 | 33 | 88 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 4.59E-12 | 33 | 87 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-9 | 34 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-9 | 35 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-6 | 36 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.10E-8 | 37 | 84 | No hit | No description |
PROSITE profile | PS51294 | 17.182 | 103 | 159 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.38E-16 | 104 | 159 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.4E-16 | 106 | 157 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 9.8E-11 | 107 | 153 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-10 | 107 | 157 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.26E-9 | 110 | 155 | No hit | No description |
Pfam | PF00249 | 1.9E-11 | 110 | 154 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MARSSMEVLP PATMPCYPSS RSFPGEWWSG GGVGTGRWTP EENKRFEYAL ATFDKDTPDR 60 WLKVAASIPG KTPSDVESHY RDLLDDHPYC VAGKRSGPRA PDQERKKGVP WTEDEHKRFL 120 LGLQKHGKGD WRNISRNFVI TRNPTQVASH AQKYFIRLNS GGKDKRRSSI HDITTANLPE 180 NEPPLPSRSS SSASAPPPSV SFSSILDSNR PNEATALPSS LAQGSQFVQP RHGVTAYGPK 240 LEAHDPMFRD RNLLFQMQAS HHHPHG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-16 | 34 | 94 | 6 | 67 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009419728.1 | 1e-177 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-67 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | M0RE93 | 0.0 | M0RE93_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P00660_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 4e-61 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
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