PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P00660_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 266aa    MW: 29657.1 Da    PI: 9.9272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P00660_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-113684248
                            SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                            grWT+eE +++  a + + ++   +W ++a+ ++ g+t+ ++ s+++++l
  GSMUA_Achr10P00660_001 36 GRWTPEENKRFEYALATFDKDtpdRWLKVAASIP-GKTPSDVESHYRDLL 84
                            9*********************************.************986 PP
2Myb_DNA-binding41.33.5e-13110154347
                             SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             +WT++E+++++ + +++G+g+W+ I+r +  +R + q+ s+ qky
  GSMUA_Achr10P00660_001 110 PWTEDEHKRFLLGLQKHGKGDWRNISRNFVITRNPTQVASHAQKY 154
                             8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.5843388IPR017884SANT domain
SuperFamilySSF466894.59E-123387IPR009057Homeodomain-like
SMARTSM007172.3E-93486IPR001005SANT/Myb domain
PfamPF002493.0E-93584IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-63685IPR009057Homeodomain-like
CDDcd001677.10E-83784No hitNo description
PROSITE profilePS5129417.182103159IPR017930Myb domain
SuperFamilySSF466894.38E-16104159IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-16106157IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.8E-11107153IPR009057Homeodomain-like
SMARTSM007171.1E-10107157IPR001005SANT/Myb domain
CDDcd001673.26E-9110155No hitNo description
PfamPF002491.9E-11110154IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MARSSMEVLP PATMPCYPSS RSFPGEWWSG GGVGTGRWTP EENKRFEYAL ATFDKDTPDR  60
WLKVAASIPG KTPSDVESHY RDLLDDHPYC VAGKRSGPRA PDQERKKGVP WTEDEHKRFL  120
LGLQKHGKGD WRNISRNFVI TRNPTQVASH AQKYFIRLNS GGKDKRRSSI HDITTANLPE  180
NEPPLPSRSS SSASAPPPSV SFSSILDSNR PNEATALPSS LAQGSQFVQP RHGVTAYGPK  240
LEAHDPMFRD RNLLFQMQAS HHHPHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-163494667RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419728.11e-177PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H72e-67DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM0RE930.0M0RE93_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P00660_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.14e-61Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]