PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P00550_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 182aa MW: 20917.4 Da PI: 10.0154 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.6 | 4.6e-08 | 39 | 87 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ rE+ RRdr+N++f eL +l + + +K +K ++L+ A++ + +L GSMUA_Achr10P00550_001 39 RTKACREKLRRDRLNDRFRELCCVLDPG---KPPKADKLAVLRDATHLLIQL 87 57889****************9777777...99************9988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.255 | 36 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.97E-11 | 37 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.25E-5 | 39 | 90 | No hit | No description |
Pfam | PF00010 | 1.6E-5 | 40 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.5E-10 | 41 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0024 | 42 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MFLFPICTTN YISIGKDIKN IQVFFLFRRA RVESSAAPRT KACREKLRRD RLNDRFRELC 60 CVLDPGKPPK ADKLAVLRDA THLLIQLRVE AKKLKESNEA LQDAIKNLKA EKSELRDEKT 120 RLRCEKEQME QMLRGISFTG QSAAVPATND KTFAYMPICM WQWVPPAALD TSQDHVLRPP 180 VA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009419715.1 | 1e-109 | PREDICTED: transcription factor ILR3-like | ||||
Refseq | XP_009419716.1 | 1e-109 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 3e-54 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | M0RE82 | 1e-132 | M0RE82_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P00550_001 | 1e-132 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9386 | 31 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-56 | bHLH family protein |