PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr10P00340_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bZIP
Protein Properties Length: 457aa    MW: 50314.3 Da    PI: 6.7504
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr10P00340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.95.9e-10173215547
                             CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                  bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                             k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L+k
  GSMUA_Achr10P00340_001 173 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQK 215
                             7889************************988888887777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.2E-8169232IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.438171215IPR004827Basic-leucine zipper domain
PfamPF001704.0E-7173215IPR004827Basic-leucine zipper domain
CDDcd147081.57E-21173224No hitNo description
SuperFamilySSF579595.38E-7173216No hitNo description
Gene3DG3DSA:1.20.5.1708.2E-8174218No hitNo description
PROSITE patternPS000360176191IPR004827Basic-leucine zipper domain
PfamPF141447.1E-33255330IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MGSSIDGVGF EDGKLTAAGM PSFVSSTTVV QNNSREGNTT QRISDFGVLE QSITFHIDPA  60
VSVKHSGQSI NSDPSQFGVL GKPIASTEIA PSAARVESLT SFQHKEKLHS LISFSSGQFE  120
NWGESMADAS PRTDTSTDVD TDDKNQRLER GQLAFAAASD SSDRSKDKTL DQKTLRRLAQ  180
NREAARKSRL RKKAYVQQLE SSRLKLTQLE QELQKARQQG IFISNSGDQS HATSGNGALT  240
FDVEYARWLE EHNRQISELR AAVNAHASEN DLRVIVDGVM AHYDEIFRLK GIAAKADVFH  300
ILSGMWKTPA ERCFLWLGGF RSSELLKLLA NQLEPLTEQQ MMGICNLQQS SQQAEDALSQ  360
GMDALQQSLS ETLAGSLGPS GTSGNVANYM GQMAMAMGKL GTLENFLHQA DNLRQQTLQQ  420
MHRILTTRQS ARALLAISDY FSRLRALSSL WLARPQE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5825520.0KF582552.1 Musa acuminata AAA Group cultivar Cavendish bzip transcription factor (TGA1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419683.10.0PREDICTED: transcription factor TGA2.2-like isoform X6
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLM0RE610.0M0RE61_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr10P00340_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-145bZIP family protein