PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr10P00170_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 175aa MW: 19007.1 Da PI: 12.4826 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.2 | 0.00034 | 112 | 146 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ ++ Lr+l+P + + ls + Le+Av+Y+ L GSMUA_Achr10P00170_001 112 RVRGRLRVLRRLVPGC-----RTLSAGSLLEEAVDYVAAL 146 56778889*******9.....78*************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.448 | 97 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-8 | 111 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-7 | 114 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MIPSSASSSS GSRKKRMKRG PKAQPGTKWR TAAQERVYGR RLLEALRATA ELGPRAVKEA 60 ADSALAFTAR GRSRWSRAIL LSPRRRARLL LRTGSKIRRG RRRARAAEAG ERVRGRLRVL 120 RRLVPGCRTL SAGSLLEEAV DYVAALEMQV KAMRALADAL SPAPAAAEPG SRGGV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009419666.1 | 1e-114 | PREDICTED: transcription factor bHLH147-like | ||||
TrEMBL | M0RE44 | 1e-112 | M0RE44_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr10P00170_001 | 1e-113 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1658 | 5 | 8 |