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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Lus10043332 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 1571aa MW: 177224 Da PI: 8.0852 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 12.8 | 0.00036 | 1454 | 1479 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
++C C++ Fs+k +L++H r+ +
Lus10043332 1454 FQCDidGCTMGFSSKQELNVHKRNiC 1479
89********************9877 PP
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| 2 | zf-C2H2 | 14.2 | 0.00013 | 1479 | 1501 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23
Cp Cgk+F ++ +L++H r+H
Lus10043332 1479 CPvkGCGKVFFSHKYLVQHRRVH 1501
9999*****************99 PP
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| 3 | zf-C2H2 | 11.7 | 0.00081 | 1537 | 1563 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23
y+C Cg++F+ s++ rH r+ H
Lus10043332 1537 YVCAeeGCGQTFRFVSDFSRHKRKtgH 1563
89********************99666 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00545 | 5.9E-16 | 23 | 64 | IPR003349 | JmjN domain |
| PROSITE profile | PS51183 | 14.437 | 24 | 65 | IPR003349 | JmjN domain |
| Pfam | PF02375 | 1.7E-14 | 25 | 58 | IPR003349 | JmjN domain |
| SuperFamily | SSF51197 | 6.59E-12 | 117 | 177 | No hit | No description |
| SMART | SM00558 | 1.3E-16 | 193 | 385 | IPR003347 | JmjC domain |
| PROSITE profile | PS51184 | 18.933 | 193 | 385 | IPR003347 | JmjC domain |
| SuperFamily | SSF51197 | 6.59E-12 | 211 | 280 | No hit | No description |
| Pfam | PF02373 | 4.1E-15 | 226 | 277 | IPR003347 | JmjC domain |
| SMART | SM00355 | 8.8 | 1454 | 1476 | IPR015880 | Zinc finger, C2H2-like |
| SMART | SM00355 | 0.0025 | 1477 | 1501 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 12.508 | 1477 | 1506 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 1479 | 1501 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 3.1E-5 | 1479 | 1505 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 2.0E-9 | 1493 | 1535 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 2.5E-8 | 1506 | 1531 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 10.824 | 1507 | 1536 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0036 | 1507 | 1531 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 1509 | 1531 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 5.77E-8 | 1525 | 1559 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 2.7E-9 | 1532 | 1560 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 12.03 | 1537 | 1568 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.85 | 1537 | 1563 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 1539 | 1563 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1571 aa Download sequence Send to blast |
MAASGGLAAE REDVLQWLRN LPVAPEYHPT LAEFQDPIAY IFKIEKEASK YGICKIVPPV 60 LQSPKKTAIA NLNRSLAARV VGGASSSSSP PTFTTRQQQI GFCPRKPRPV QKPVWQSGEN 120 YTFQEFESKA KSFEKSYFKK YAKKGTTLSP LEIETLYWKA TVDKPFSVEY ANDMPGSAFS 180 VKKNSGIVVE GMSVGETEWN MRGVARAKGS LLRHMKEEIP GVTSPMLYIA MMFSWFAWHV 240 EDHDLHSLNY MHMGAGKTWY GVPKEAAVAF EEVVRVHGYG GEINPLRECF FQQNSCLSVD 300 HLRRLRLILV HHMLKLVSVM SGLISLFCTS CQLHLPFWVR RPQLCPRKYS LGQVFHAAGF 360 NCGEASNIAT PEWLRFAKEA AVRRASINYP PMVSHFQLLY DLASELCSRF TTNASAKPRS 420 SRLKDKQKGE SEMVTKEILV ENVMNNNNLL HNLGKGASVV LLPWSSSDIS LCSNYRFGSQ 480 FVKPSFGFRA HKGFMGQSKV SSYDDSKPDK IDVINQVKGM YPLKAKFGSS YEGKTCPVLG 540 KSGNLHNPHP ETERMAMLDN KSPDQRLFSC VTCGILNYDC VAIIQPREAA ARYFMSADCS 600 FFNDWTVVSG AGKEAFIAAD EDAGGAEDSI AHGPHDILES ENNHKQIIDL SSGAVSDTKL 660 KLETSALGLL ALNYGDSSDM DEEPGLSPDN NNTYDRMNSL SEGNNQSQDS ASPSFEEELP 720 DGTSRHKFDC GNRVFLQGVE NNVQQLENTD PLLAPTCDED SSRMHVFCLE HAVEVEQRLR 780 QIGGVHVFLL CHPDYPGVEE QAKLVSEELR VDYLWKQTNF KDASLDDEQR IQSVLDSEEA 840 IPGNSDWAVK LGINLFYSAN LSWSPLYSKQ MAYNSVIYNA FGRTSPGNSP KKSNNVSGRR 900 NGRQRKAVVG KWCGKVWMSN QVHPFLTNWD SQYQDQEQEP EKLDVQQPQV FETETLRKSV 960 KSVKKRKPKA KSASVREVAL AETEEIHKPL GRLNNRKRTN SVEEHESLHR SKLARSAVSE 1020 YVDSDDSLGD ESLQQQHKKA VSQQTREFVC EPADFYDTVH KTSQKQRRTP RVCQAKYVQK 1080 ESASDDSLEE NMLQWHGRVP RSKQQMKLMD REEVSGLPLE ESSQKSHKVY KRRKGKYAEK 1140 EYAAPSESTE NVFHRQNSSN PEGNQFEEAE FDDSLEESVK WQTASFSRED LMSDDSVYND 1200 DAHQQRGTVG GKNPSSYSAE DAVSDDPLDT DTQQLERTIP RIERSRSFGD EDAVSDDPLQ 1260 EDDMEQNFSS IHQNKRTKFA ERQEDITDEL RNSSTRRYPR KTPRGKHGRF IKGEIEDADS 1320 DHLVGEDFNE QQGRTLGSKQ KKHTRGRTPP SGKKPMQKET PLRPVKLETP RMRNKGVQKN 1380 AYQFDDVPVD DDEEEGGPSS RLRRRPSKPT KVSITKSKEI QQQQSSRIKV KSAPAGKAPA 1440 GRKGGKNKVE DGLFQCDIDG CTMGFSSKQE LNVHKRNICP VKGCGKVFFS HKYLVQHRRV 1500 HVDDRPLKCP WKGCKMAFKW AWARTEHIRV HTGARPYVCA EEGCGQTFRF VSDFSRHKRK 1560 TGHSGRKDSE * |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6a57_A | 2e-64 | 1454 | 1570 | 23 | 139 | Lysine-specific demethylase REF6 |
| 6a58_A | 2e-64 | 1454 | 1570 | 23 | 139 | Lysine-specific demethylase REF6 |
| 6a59_A | 2e-64 | 1454 | 1570 | 23 | 139 | Lysine-specific demethylase REF6 |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 960 | 966 | KSVKKRK |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Lus10043332 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024442279.1 | 0.0 | lysine-specific demethylase REF6 | ||||
| TrEMBL | A0A2K1XK92 | 0.0 | A0A2K1XK92_POPTR; Uncharacterized protein | ||||
| STRING | Lus10043332 | 0.0 | (Linum usitatissimum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF5648 | 32 | 50 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G48430.1 | 0.0 | relative of early flowering 6 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Lus10043332 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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