PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10043286
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C3H
Protein Properties Length: 488aa    MW: 55021.5 Da    PI: 5.6808
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10043286genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-0688111327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  t++C f+++ G+C  Gd+C+F+H+p
  Lus10043286  88 TVPCFFYFQ-GFCGKGDKCTFSHSP 111
                  899******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.887635IPR000571Zinc finger, CCCH-type
PfamPF156632.6E-12665No hitNo description
SMARTSM003560.0015734IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.5963763IPR000571Zinc finger, CCCH-type
SMARTSM003560.443962IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-485111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.4585112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-685110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-587111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDEELQKRNT DCVYFLASPL TCKKGAECEY RHSEMARLNP RDCWFWLSGT CLNPTCAFRH  60
PPLEKPAETP SESGAVPTQA PQPTNKPTVP CFFYFQGFCG KGDKCTFSHS PDGSMPAAKS  120
FKVPSTTNSD VRPVENNKNS TGNKTAAAPT EPRNNPSVTP KKPSANVKLQ SRPEVQQQLV  180
PKIAVQKSSS LETAAFNGEG VGVINSDYVL PSENYNGDRS YTGADQNLED HVDEHVEPEE  240
RWESSPGFDV LVDNEEEDHL HYEDEQEYMA ALDREQKEVD NRFVEYGFEE SVRHEEPLGY  300
SQSGEMDLRD HLRKRRAIDN EPFTRSSRRR DDARPYEHGL SERLRGRLAS EVGRAGIRPI  360
DDYGIHTNGG SHHGRLRHSQ FDRLRESRER TGAPMRPFIP SEVRRRPFAK ERRSSEACGE  420
FSAPKSLAEI REEKRRAEEN GYQNARDEDM GGMESANFDG PKPLNEILKE KKKLGSSVEY  480
DNGSCSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10043286
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100432860.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130921823