PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10043225
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family CPP
Protein Properties Length: 587aa    MW: 63668.6 Da    PI: 7.6185
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10043225genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.31.7e-14133171241
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                  + k+CnCk+s+Clk+YCeCfa+g++C+  C+C++C+N+ +
  Lus10043225 133 KPKQCNCKHSQCLKLYCECFASGTYCDG-CNCTGCFNNAD 171
                  5699************************.********987 PP
2TCR521.4e-16217256140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  +++kgC+Ckks ClkkYCeCf+a+  Cse+C+C+dCkN e
  Lus10043225 217 RHNKGCHCKKSGCLKKYCECFQANILCSENCRCNDCKNFE 256
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.9E-16132172IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.456133257IPR005172CRC domain
PfamPF036383.1E-11135169IPR005172CRC domain
SMARTSM011141.1E-18217258IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-12220255IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MEEGEGGEFP PNNAPQSEAQ QPLDAPAKKL ARQLDFTHTT SVALPDHSQS SQQQQPAGGG  60
GGGQWGGVDV QPIAKPLVPV AVTQSLPYLA PTAAQPPNLQ HEQVLPVVKP ENPDSPKSRS  120
RTATELKDAT PKKPKQCNCK HSQCLKLYCE CFASGTYCDG CNCTGCFNNA DNESSRREAI  180
KVTLERNPNA FRPKITSSPH GTQDKREEKG EVIVLGRHNK GCHCKKSGCL KKYCECFQAN  240
ILCSENCRCN DCKNFEGSEE RQALFHNDHA NNIAYIQQAA NAAITGAIGT SGFTSPPVSR  300
KRKGSESIFD QKGRDRALHR PGHIQQANQI IAPAPCSNPV VRGTMATLTP SKFTYRSLLA  360
DIIQPHDIKE LCSVLVVISR EAAKTLEEQR SEEEKQLGDQ RKANITSSSD QERLQNKRES  420
DAKKSKGQDD CSAIDNAGPD SSTSEGVDAP KSEPMSPGTL ALMCDEKDTM FMEAAASSSS  480
GLTDQGGNGN AVLQLPKKVG GLTEMYAEQE RVVLAKFRDC LNKLIAIGEN IKGTFLSFLF  540
SSERYFFFCT LLSVLIADIL ANSNRNKTFV FSANGVFDGS KVHIKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-311292668132Protein lin-54 homolog
5fd3_B1e-311292668132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10043225
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021641416.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-178TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A067KPI70.0A0A067KPI7_JATCU; Uncharacterized protein
STRINGLus100432250.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-161Tesmin/TSO1-like CXC domain-containing protein