PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10043167 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 524aa MW: 56961.1 Da PI: 8.339 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.7 | 7.5e-31 | 197 | 254 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ ++k+++i+Y+g+H+h+k Lus10043167 197 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-EGKITDIIYKGTHDHPK 254 8****************************************.***************85 PP | |||||||
2 | WRKY | 102.2 | 3.1e-32 | 349 | 407 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct gCpv+k+ver+++d k+v++tYeg+Hnh+ Lus10043167 349 LDDGYKWRKYGQKVVRGNPNPRSYYKCTNGGCPVRKHVERASHDLKAVITTYEGKHNHD 407 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.9E-26 | 190 | 255 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.928 | 191 | 255 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-24 | 192 | 255 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.3E-33 | 196 | 254 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.1E-24 | 197 | 253 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.0E-36 | 334 | 409 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-28 | 341 | 409 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.883 | 344 | 409 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-36 | 349 | 408 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.4E-25 | 350 | 407 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MGMTTNSATV PPASAATDIS GARYKLMSPA KLPISRSPCV TIPPGLSPTS FLDSSVLLSN 60 FKTEPSPAAG SFMKPQSVRA SSISNPYSVT AVSSDTFRER ISSFFEFRPP CITNTTSADM 120 NNHRSEQSIQ YYGTSQSQIQ SVSSLSSPKA EIVTNSNELR PLHMVSSGAT APVQDEAEEQ 180 NQIGNTNSGT TNSTTSDDGY NWRKYGQKHV KGSEFPRSYY KCTHPNCEVK KLFERSHEGK 240 ITDIIYKGTH DHPKPQISRR YTTGALLSVQ EETPDGEASH TTGQNGGTLE LSLAAATGEI 300 AEGPEDDEDP FFSKRRKMDT ASFDVTPVVV KPIREPRVVV QTLSEVDILD DGYKWRKYGQ 360 KVVRGNPNPR SYYKCTNGGC PVRKHVERAS HDLKAVITTY EGKHNHDVPT TRTSSNAAAG 420 GSAAMMSSRL RIGSDESETI SLGLRVGMYS ESSDQQQQPL LSQNGQSSSW SSFSRVANRH 480 GVHMNQYVSG QTPNEVLSVG LPTLKHRSSY PYPPNTGTLL SGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-35 | 197 | 409 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 6e-35 | 197 | 409 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10043167 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012070967.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
Swissprot | Q93WV0 | 1e-161 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | M9TMC3 | 0.0 | M9TMC3_JATCU; WRKY transcription factor 09 | ||||
STRING | Lus10043167 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3946 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 1e-141 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10043167 |