PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10043167
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 524aa    MW: 56961.1 Da    PI: 8.339
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10043167genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.5e-31197254260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ ++k+++i+Y+g+H+h+k
  Lus10043167 197 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-EGKITDIIYKGTHDHPK 254
                  8****************************************.***************85 PP

2WRKY102.23.1e-32349407159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct  gCpv+k+ver+++d k+v++tYeg+Hnh+
  Lus10043167 349 LDDGYKWRKYGQKVVRGNPNPRSYYKCTNGGCPVRKHVERASHDLKAVITTYEGKHNHD 407
                  59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-26190255IPR003657WRKY domain
PROSITE profilePS5081122.928191255IPR003657WRKY domain
SuperFamilySSF1182902.62E-24192255IPR003657WRKY domain
SMARTSM007749.3E-33196254IPR003657WRKY domain
PfamPF031068.1E-24197253IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.0E-36334409IPR003657WRKY domain
SuperFamilySSF1182901.96E-28341409IPR003657WRKY domain
PROSITE profilePS5081137.883344409IPR003657WRKY domain
SMARTSM007741.2E-36349408IPR003657WRKY domain
PfamPF031067.4E-25350407IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MGMTTNSATV PPASAATDIS GARYKLMSPA KLPISRSPCV TIPPGLSPTS FLDSSVLLSN  60
FKTEPSPAAG SFMKPQSVRA SSISNPYSVT AVSSDTFRER ISSFFEFRPP CITNTTSADM  120
NNHRSEQSIQ YYGTSQSQIQ SVSSLSSPKA EIVTNSNELR PLHMVSSGAT APVQDEAEEQ  180
NQIGNTNSGT TNSTTSDDGY NWRKYGQKHV KGSEFPRSYY KCTHPNCEVK KLFERSHEGK  240
ITDIIYKGTH DHPKPQISRR YTTGALLSVQ EETPDGEASH TTGQNGGTLE LSLAAATGEI  300
AEGPEDDEDP FFSKRRKMDT ASFDVTPVVV KPIREPRVVV QTLSEVDILD DGYKWRKYGQ  360
KVVRGNPNPR SYYKCTNGGC PVRKHVERAS HDLKAVITTY EGKHNHDVPT TRTSSNAAAG  420
GSAAMMSSRL RIGSDESETI SLGLRVGMYS ESSDQQQQPL LSQNGQSSSW SSFSRVANRH  480
GVHMNQYVSG QTPNEVLSVG LPTLKHRSSY PYPPNTGTLL SGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-35197409877Probable WRKY transcription factor 4
2lex_A6e-35197409877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10043167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070967.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-161WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLM9TMC30.0M9TMC3_JATCU; WRKY transcription factor 09
STRINGLus100431670.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-141WRKY family protein