PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10043095
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 380aa    MW: 41855.6 Da    PI: 8.6191
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10043095genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1738.6e-54201471128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                  lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ ++
  Lus10043095  20 LPPGFRFHPTDEELVVHYLKKKASSAPLPV-SIIAEVDLYKFDPWELPAKATFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPVLTSgGT 116
                  79****************************.89***************9888999**************************************99777 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++vg+kk Lvfy g+ pkg+kt+W+mheyrl
  Lus10043095 117 QKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 147
                  88***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-6516181IPR003441NAC domain
PROSITE profilePS5100561.74520181IPR003441NAC domain
PfamPF023653.1E-2821147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MESTDSSTGA CGGTSNQPNL PPGFRFHPTD EELVVHYLKK KASSAPLPVS IIAEVDLYKF  60
DPWELPAKAT FGEHEWYFFS PRDRKYPNGV RPNRAATSGY WKATGTDKPV LTSGGTQKVG  120
VKKALVFYGG KPPKGVKTNW IMHEYRLADN KVTNRPPGFD LGNKKNSLRL DDWVLCRIYK  180
KNNNHRSLDQ EKEDSMEDMM LPIPPSLLVS SNNHHPAASR IHQLGKGGGS YGGLLDIMNS  240
PHHHHDPSLF QGIDHHHHTT NNSFFSHLAS SSSSSSRQQQ HLQLPTNNML APSLKRPSSP  300
AASLFWPPVV VDDHDSSSSK RFHDDNGVGS GGDGTNDGGT SIASLLSQLS QTTPTQQQQD  360
LTELRTAPYQ QLPGMNWYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-741918414171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10043095
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007021327.11e-155PREDICTED: NAC transcription factor 56
SwissprotQ9LD441e-118NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A061F8181e-154A0A061F818_THECC; NAC domain protein, IPR003441
STRINGLus100430950.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-110NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]