PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10042995 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 208aa MW: 23300.9 Da PI: 6.5525 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.7 | 1.9e-15 | 104 | 154 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +g ++AeIrdp+ r++lg+fg+ +Aa+a++ a +++g Lus10042995 104 KFRGVRKRP-WGEYAAEIRDPTRK--GSRVWLGTFGSDVDAARAYDFAEFEMRG 154 89*******.**********8542..4**********99**********99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-28 | 103 | 163 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-29 | 104 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-19 | 104 | 164 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-10 | 104 | 154 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.85E-24 | 104 | 162 | No hit | No description |
PROSITE profile | PS51032 | 22.695 | 104 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 105 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-10 | 144 | 164 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MSTLAESTAL QLIKQHLLDD ESSSSSSSPA HLFISNFNSL PFKIKEEEDQ SRSPVRSSES 60 ELDCFFFQQQ SPEFLRDQTT SSKSAASGSP VPSDQKVQEE GGRKFRGVRK RPWGEYAAEI 120 RDPTRKGSRV WLGTFGSDVD AARAYDFAEF EMRGRKAILN FPLEAGKYDL PVCTASRKRR 180 KLKNQAAATA PVNWEDEDQK TLLWALE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-24 | 102 | 163 | 3 | 64 | ATERF1 |
3gcc_A | 6e-24 | 102 | 163 | 3 | 64 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10042995 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU829753 | 1e-137 | EU829753.1 Linum usitatissimum clone LU0011F06 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012090504.1 | 2e-45 | ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | A0A1L6CB05 | 2e-44 | A0A1L6CB05_9ROSI; AP2/ERF domain-containing transcription factor | ||||
TrEMBL | A0A1L6CB78 | 2e-44 | A0A1L6CB78_VERFO; AP2/ERF domain-containing transcription factor | ||||
STRING | Lus10042995 | 1e-151 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G07580.1 | 2e-37 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10042995 |