PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042962
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family TCP
Protein Properties Length: 472aa    MW: 53267.8 Da    PI: 10.361
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042962genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.15.4e-331463404130
          TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssa..sec. 73 
                  +kdrhski T++g+RdRR+Rls+++a+ fF Lqd+LGfdk+s+t+eWLl+q+  +i+ l ++                         +s+++  + c 
  Lus10042962 146 RKDRHSKIQTAQGPRDRRMRLSLKVARPFFTLQDKLGFDKPSNTVEWLLTQSRSQIDLLFSStstttstisdtqaaaimttmlnymnTSDHHkdMTCk 243
                  8************************************************************9999999999888888888888888633333332334 PP

          TCP  74 ..eaesssssasnsssg.......................................kaaksaa.kskksqksaasalnlakesrakarararertrek 129
                     +++s ss++n+  +                                       ++ +++  ++k   +++++++ + ke r kararar+rtr+k
  Lus10042962 244 ssLDQDSTSSTANN--NttitpppaptkvakkrkmvdtnkkktnkmkmmimkkkksSSTTETYvEGKVVMNHHHHHHLVVKELRDKARARARQRTRDK 339
                  33333333333333..14477888888888888888888888888889988876643333333455555555555666667888************99 PP

          TCP 130 m 130
                  +
  Lus10042962 340 K 340
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.144146204IPR017887Transcription factor TCP subgroup
PfamPF036341.5E-33146340IPR005333Transcription factor, TCP
PROSITE profilePS513709.946322339IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MWEDYYYNNN NNHHHMNTKH HHHHLQHHLL PNISAGAGEG GVLQIPPPPY SSNNSMFNFV  60
QSSLVSSTSA PVIADSDDQL LLFHNPVWPP PPPPPPNHHH HPLTISSTSD DQPHHQIPIT  120
TAAAAAAPRP KKTTTKTAVT RKRCWRKDRH SKIQTAQGPR DRRMRLSLKV ARPFFTLQDK  180
LGFDKPSNTV EWLLTQSRSQ IDLLFSSTST TTSTISDTQA AAIMTTMLNY MNTSDHHKDM  240
TCKSSLDQDS TSSTANNNTT ITPPPAPTKV AKKRKMVDTN KKKTNKMKMM IMKKKKSSST  300
TETYVEGKVV MNHHHHHHLV VKELRDKARA RARQRTRDKK LFYSSLLMLN NSNNNNNHEP  360
TTTAAASSSS SSSKSSGSCH HNHHNDPLHQ HHQLMMMLDE GNGGDAFPKI DLRLQQRFAT  420
PTLVPLPHQH EAQHQTVTSN ADQYYLQSFY KQWDATATYN NLQFATTRLP N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280295KKKTNKMKMMIMKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042962
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8840041e-135HQ884004.1 Linum usitatissimum clone Contig147 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100429620.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.15e-21TCP domain protein 12