PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042749
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 27291 Da    PI: 8.6906
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042749genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.27.9e-27959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien snrqvt+skRrng++KKA+E+ vLCda v++iif+s+gk+++++s
  Lus10042749  9 KRIENVSNRQVTYSKRRNGLIKKAKEITVLCDAHVSLIIFASSGKMHDFCS 59
                 79***********************************************96 PP
2K-box69.79.4e-2471168198
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  y+k+sgk+l++ak+e+l++e++++kke++n+q e+Rhl Ged++sL++keL+ Le+ L+++++++ + ++e+   + ++ ++ e+e+q+ +  L ++ 
  Lus10042749  71 YHKQSGKRLWDAKHENLSNEIDRMKKENDNMQIELRHLRGEDITSLNYKELMILEEGLQNGISRVTDLQSEYRDLMKRKGKMAEDENQRLHFILMQQQ 168
                  8999*************************************************************999999888888888888888888888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.824161IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-37160IPR002100Transcription factor, MADS-box
CDDcd002657.03E-39280No hitNo description
SuperFamilySSF554553.27E-33296IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.2E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014866.8E-1482161IPR002487Transcription factor, K-box
PROSITE profilePS5129713.43184171IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MGRGKIEIKR IENVSNRQVT YSKRRNGLIK KAKEITVLCD AHVSLIIFAS SGKMHDFCSL  60
PTTLSEILEK YHKQSGKRLW DAKHENLSNE IDRMKKENDN MQIELRHLRG EDITSLNYKE  120
LMILEEGLQN GISRVTDLQS EYRDLMKRKG KMAEDENQRL HFILMQQQQQ EEEMKRLQEM  180
TVMEGYHHHS HPNHHQHRSS AAAMNMRDNN NNNNNSDHQM PFSLIPLQPN LH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-17175173MEF2 CHIMERA
6byy_B5e-17175173MEF2 CHIMERA
6byy_C5e-17175173MEF2 CHIMERA
6byy_D5e-17175173MEF2 CHIMERA
6bz1_A6e-17191183MEF2 CHIMERA
6bz1_B6e-17191183MEF2 CHIMERA
6bz1_C6e-17191183MEF2 CHIMERA
6bz1_D6e-17191183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042749
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009358735.14e-91PREDICTED: floral homeotic protein PMADS 2
SwissprotQ033786e-85GLOB_ANTMA; Floral homeotic protein GLOBOSA
TrEMBLA0A0P0IP591e-91A0A0P0IP59_MERAN; Pistillata
STRINGLus100427491e-172(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.16e-72MIKC_MADS family protein
Publications ? help Back to Top
  1. Tröbner W, et al.
    GLOBOSA: a homeotic gene which interacts with DEFICIENS in the control of Antirrhinum floral organogenesis.
    EMBO J., 1992. 11(13): p. 4693-704
    [PMID:1361166]
  2. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  3. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]