PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10042731 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | NAC | ||||||||
Protein Properties | Length: 297aa MW: 33482 Da PI: 7.9629 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.3 | 4.4e-51 | 5 | 129 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtd+elv++yL++k++++++++ +i+e+d+yk++PwdLp + +ekewyfFs+rd+ky++g+r+nr++++gyWkatg dk++ s + Lus10042731 5 LPPGFRFHPTDDELVKHYLCRKCASQPISV-PIIAEIDLYKHDPWDLPGLALYGEKEWYFFSPRDRKYPNGSRPNRSAATGYWKATGADKSIGS--PR 99 79****************************.88***************6555679*********************99**************99..77 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 + +kk Lvfy+g+apkgekt+W+mheyrl Lus10042731 100 PIAIKKALVFYTGKAPKGEKTNWIMHEYRL 129 9***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.1E-60 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.171 | 5 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-27 | 6 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MVLELPPGFR FHPTDDELVK HYLCRKCASQ PISVPIIAEI DLYKHDPWDL PGLALYGEKE 60 WYFFSPRDRK YPNGSRPNRS AATGYWKATG ADKSIGSPRP IAIKKALVFY TGKAPKGEKT 120 NWIMHEYRLA DVDRSAARKK NSLRLDDWVL CRIYNKKGAA VDRRTAGIRR AVSPETMEDI 180 KPSVMAPPPP QLPTGGHQTN PANSGHTYLE TSESVPRLLT DSSCSEQVFS PEFTTSEVQS 240 EPKWKELGAG MNDLDFGFNY MDATMEKEFG SQFQFPGSSN QMSPLQDMFM YLQQPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-77 | 3 | 157 | 13 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10042731 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ887903 | 1e-116 | HQ887903.1 Linum usitatissimum clone GMU2AYZ01A2204 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015575373.1 | 1e-152 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-146 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | B9S2X2 | 1e-150 | B9S2X2_RICCO; NAC domain-containing protein, putative | ||||
STRING | Lus10042731 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-148 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10042731 |