PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10042646
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family HSF
Protein Properties Length: 411aa    MW: 45070.2 Da    PI: 8.3521
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10042646genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35331252103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i+
   Lus10042646  33 FLTKTYQLVDDPSTDDIVSWGEDHSTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDFFKKGEKHLLCEIH 120
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Lus10042646 121 RRKTA 125
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3724117IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.4E-5929122IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.14E-3330122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-3133122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-203356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-207183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.1E-208496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MALIVENSAS SSCGVDGGML LSLESQKSVP APFLTKTYQL VDDPSTDDIV SWGEDHSTFI  60
VWRPPEFARD LLPNYFKHNN FSSFVRQLNT YGFRKIVPDR WEFANDFFKK GEKHLLCEIH  120
RRKTAQLPPP PPPHHRHHYH PAGGFFPFST NRLSISPSDD ADDHYFQHNH NNWSPPSGTL  180
SGLMGPASMM INGAGGGGVY YTTGGGGGGG SGNTSSAAGT VTALSQDNER LRRSNNMLMT  240
ELSHMKKLYN DIIYFVQNHV KPVPPPTPNK APPLNQLLLG GGYNNNTNNM TSTMMMMKKG  300
QSGAPHVQVL GTNSTTITSP SYSGNKSSNN SHSTVTILEE IEGCNNNNTK LFGVAINNNH  360
NHNQSSKKRL HPDHDYAINH QTSTNSSSKS HRFVLEKDDL GLNLMPPSPC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-222912426131Heat shock factor protein 1
5d5v_B9e-222912426131Heat shock factor protein 1
5d5v_D9e-222912426131Heat shock factor protein 1
5hdg_A5e-22291247112Heat shock factor protein 1
5hdn_A5e-22291247112Heat shock factor protein 1
5hdn_B5e-22291247112Heat shock factor protein 1
5hdn_C5e-22291247112Heat shock factor protein 1
5hdn_D5e-22291247112Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10042646
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068333.11e-125heat stress transcription factor B-4
TrEMBLA0A371FL021e-124A0A371FL02_MUCPR; Heat stress transcription factor B-4
STRINGLus100426460.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.17e-92heat shock transcription factor B4