PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10042538 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | WRKY | ||||||||
Protein Properties | Length: 312aa MW: 34452.4 Da PI: 9.7176 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.2 | 5.5e-31 | 241 | 298 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p ++++tYeg+Hnh+ Lus10042538 241 DEYSWRKYGQKPIKGSPYPRGYYKCSSLrGCPARKHVERCVEEPAMLIVTYEGDHNHS 298 9*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 8.4E-15 | 190 | 237 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.6E-33 | 227 | 298 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.31 | 234 | 300 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-26 | 237 | 298 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-36 | 239 | 299 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-26 | 241 | 297 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MEGVEEASKE AVESCYRVLG LICHPIEDQS VQATNLVAET GDAVLKFKRV VSLLSNTGLV 60 GRGRFRKQQN KFLKSSSLPH TIFLDYDDGS ISAPTVTAEI LAPRPLQIVP PPNNTRFVPT 120 RFPDPRMMMF QQQNQQKVKY DHQAEMMMKF DHGGSESTTT RSFISSLSMD GGGSDSFHLI 180 GIPQSSSYHR RRCSSGSVKC GASAADASCG KCHCSKKRKL RVKRSIKVPA ISNKVADIPP 240 DEYSWRKYGQ KPIKGSPYPR GYYKCSSLRG CPARKHVERC VEEPAMLIVT YEGDHNHSRL 300 LSSSSSMSAL T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-20 | 232 | 297 | 7 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 68 | GRGRFRKQQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10042538 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021894273.1 | 1e-103 | probable WRKY transcription factor 74 | ||||
Swissprot | Q93WU6 | 1e-100 | WRK74_ARATH; Probable WRKY transcription factor 74 | ||||
TrEMBL | A0A140H8P9 | 1e-100 | A0A140H8P9_MANES; WRKY transcription factor 45 | ||||
STRING | Lus10042538 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28650.1 | 2e-91 | WRKY DNA-binding protein 74 |
Link Out ? help Back to Top | |
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Phytozome | Lus10042538 |
Publications ? help Back to Top | |||
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